Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DEHMNGDP_1 | 1945617 | 1946822 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| DEHMNGDP_1 | 1670846 | 1672051 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| DEHMNGDP_2 | 474343 | 475308 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DEHMNGDP_2 | 474343 | 475308 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| DEHMNGDP_5 | 428247 | 428897 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.85 | 81.27 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DEHMNGDP_2 | 474343 | 475305 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| DEHMNGDP_1 | 1670312 | 1670821 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| DEHMNGDP_1 | 1945083 | 1945592 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| DEHMNGDP_1 | 1670849 | 1672051 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| DEHMNGDP_1 | 1945620 | 1946822 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| DEHMNGDP_5 | 428250 | 428903 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 97.25 | 81.95 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DEHMNGDP_2 | 309467 | 311047 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DEHMNGDP_1 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_2 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_3 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_4 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_5 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_6 | 1.0 | 0.0 | 1.0 |
| DEHMNGDP_7 | 1.0 | 0.0 | 1.0 |
| DEHMNGDP_8 | 1.0 | 0.0 | 1.0 |
| DEHMNGDP_9 | 1.0 | 0.0 | 1.0 |
| DEHMNGDP_10 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_11 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_12 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_13 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_14 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_15 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_16 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_17 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_18 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_19 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_20 | 1.0 | 0.0 | 1.0 |
| DEHMNGDP_21 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_22 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_23 | 1.0 | 0.0 | 1.0 |
| DEHMNGDP_24 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_25 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_26 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_27 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_28 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_29 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_30 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_31 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_32 | 0.0 | 1.0 | 0.0 |
| DEHMNGDP_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DEHMNGDP_1 | 1241682 | 1253233 | False | Siphoviridae | VOG0749, |
| DEHMNGDP_1 | 1259159 | 1265564 | False | Unknown | VOG9667, |
| DEHMNGDP_2 | 1061058 | 1073049 | False | Unknown | VOG0572, |
| DEHMNGDP_5 | 247328 | 258206 | False | Siphoviridae | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)