Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGMMBNOO_1 | 2410790 | 2411755 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| JGMMBNOO_2 | 609540 | 610745 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JGMMBNOO_2 | 334747 | 335952 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JGMMBNOO_1 | 2410790 | 2411755 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| JGMMBNOO_1 | 1615279 | 1615929 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.85 | 81.27 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGMMBNOO_1 | 2410793 | 2411755 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| JGMMBNOO_2 | 335977 | 336486 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JGMMBNOO_2 | 610770 | 611279 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JGMMBNOO_2 | 334747 | 335949 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JGMMBNOO_2 | 609540 | 610742 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JGMMBNOO_1 | 1615282 | 1615935 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 97.25 | 81.95 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGMMBNOO_1 | 2576648 | 2575068 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGMMBNOO_1 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_2 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_3 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_4 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_5 | 1.0 | 0.0 | 1.0 |
| JGMMBNOO_6 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_7 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_8 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_9 | 1.0 | 0.0 | 1.0 |
| JGMMBNOO_10 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_11 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_12 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_13 | 1.0 | 0.0 | 1.0 |
| JGMMBNOO_14 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_15 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_16 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_17 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_18 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_19 | 1.0 | 0.0 | 1.0 |
| JGMMBNOO_20 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_21 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_22 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_23 | 0.0 | 1.0 | 0.0 |
| JGMMBNOO_24 | 1.0 | 0.0 | 1.0 |
| JGMMBNOO_25 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGMMBNOO_1 | 1434343 | 1445221 | False | Siphoviridae | VOG3992, |
| JGMMBNOO_1 | 1814117 | 1824966 | False | Unknown | VOG3699, |
| JGMMBNOO_2 | 1028128 | 1039940 | False | Unknown | VOG4861, |
Phigaro v2.4.0 (Database: Jan. 2024 release)