Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIGPKBPL_2 | 1447643 | 1448608 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| GIGPKBPL_1 | 1120280 | 1122205 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GIGPKBPL_1 | 713448 | 714311 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| GIGPKBPL_1 | 711075 | 712205 | ErmF | ARO:3000498 | ErmF | 99.62 | 141.35 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIGPKBPL_2 | 1447643 | 1448608 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| GIGPKBPL_1 | 711405 | 712205 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| GIGPKBPL_1 | 1120280 | 1122205 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIGPKBPL_1 | 713451 | 714311 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| GIGPKBPL_1 | 711405 | 712202 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| GIGPKBPL_2 | 1447646 | 1448608 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 99.69 | 100.00 | WP_004348227.1 |
| GIGPKBPL_1 | 1120280 | 1122202 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GIGPKBPL_2 | 1091391 | 1092971 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIGPKBPL_1 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_2 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_3 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_4 | 1.0 | 0.0 | 1.0 |
| GIGPKBPL_5 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_6 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_7 | 1.0 | 0.0 | 1.0 |
| GIGPKBPL_8 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_9 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_10 | 1.0 | 0.0 | 1.0 |
| GIGPKBPL_11 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_12 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_13 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_14 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_15 | 0.0 | 1.0 | 0.0 |
| GIGPKBPL_16 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIGPKBPL_1 | 1489480 | 1505136 | False | Unknown | VOG4545, |
Phigaro v2.4.0 (Database: Jan. 2024 release)