Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CGEAFGJL_5 | 24802 | 24098 | WalR | 5.24e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CGEAFGJL_66 | 15324 | 15521 | CspR | 9.97e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGEAFGJL_1 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_2 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_3 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_4 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_5 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_6 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_7 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_8 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_9 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_10 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_11 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_12 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_13 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_14 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_15 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_16 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_17 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_18 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_19 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_20 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_21 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_22 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_23 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_24 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_25 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_27 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_28 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_29 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_30 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_31 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_32 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_33 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_34 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_35 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_36 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_37 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_38 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_39 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_40 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_41 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_42 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_43 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_44 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_45 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_46 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_47 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_48 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_49 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_50 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_51 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_52 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_53 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_54 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_56 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_57 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_58 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_59 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_60 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_61 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_62 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_63 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_64 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_65 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_66 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_67 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_68 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_69 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_70 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_71 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_72 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_74 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_75 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_76 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_77 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_78 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_79 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_80 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_81 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_82 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_83 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_84 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_85 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_86 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_87 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_88 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_89 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_90 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_91 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_92 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_93 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_94 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_95 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_96 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_97 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_98 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_99 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_100 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_101 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_102 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_103 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_104 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_105 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_106 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_107 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_108 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_109 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_110 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_111 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_112 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_113 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_114 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_115 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_116 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_118 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_119 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_120 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_121 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_122 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_123 | 1.0 | 0.0 | 1.0 |
| CGEAFGJL_124 | 0.0 | 1.0 | 0.0 |
| CGEAFGJL_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGEAFGJL_24 | 3 | 20536 | False | Siphoviridae | VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10868, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG0531 |
| CGEAFGJL_121 | 49889 | 56919 | False | Siphoviridae | VOG9667, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536 |
Phigaro v2.4.0 (Database: Jan. 2024 release)