Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JINCKFLG_54 | 40812 | 39661 | tufA | 0.0 | elongation factor Tu | 85.68 | 97.21 | AHM69299 |
| JINCKFLG_104 | 3377 | 2508 | pdxS | 7.25e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JINCKFLG_92 | 60817 | 61593 | CodY | 3.32e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| JINCKFLG_92 | 60817 | 61593 | codY | 1.07e-124 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| JINCKFLG_45 | 4733 | 4164 | ClpP | 2.46e-105 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| JINCKFLG_100 | 21535 | 21143 | spxA1 | 3.97e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| JINCKFLG_100 | 21535 | 21143 | spx | 8.60e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| JINCKFLG_7 | 1202 | 960 | SpoVG | 2.83e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| JINCKFLG_37 | 746 | 549 | CspA | 8.19e-32 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| JINCKFLG_70 | 8579 | 8385 | CspD | 2.74e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| JINCKFLG_70 | 8579 | 8382 | CspB | 1.84e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| JINCKFLG_37 | 746 | 552 | CspR | 1.52e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JINCKFLG_1 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_2 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_3 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_4 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_5 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_6 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_7 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_8 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_9 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_10 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_11 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_12 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_13 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_14 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_15 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_16 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_17 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_18 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_19 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_20 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_21 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_22 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_23 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_24 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_25 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_26 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_27 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_28 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_29 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_30 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_31 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_32 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_33 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_34 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_35 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_36 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_37 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_38 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_39 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_40 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_41 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_42 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_43 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_44 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_45 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_46 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_47 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_48 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_49 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_50 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_51 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_52 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_53 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_54 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_55 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_56 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_57 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_58 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_59 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_60 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_61 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_62 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_63 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_64 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_65 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_66 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_67 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_68 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_69 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_70 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_71 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_72 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_73 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_74 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_75 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_76 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_77 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_78 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_79 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_80 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_81 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_82 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_83 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_84 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_85 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_86 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_87 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_88 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_89 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_90 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_91 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_92 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_93 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_94 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_95 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_96 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_97 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_98 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_99 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_100 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_101 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_102 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_103 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_104 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_106 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_107 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_108 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_109 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_110 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_111 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_112 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_113 | 1.0 | 0.0 | 1.0 |
| JINCKFLG_114 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_115 | 0.0 | 1.0 | 0.0 |
| JINCKFLG_116 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JINCKFLG_90 | 32800 | 60007 | False | Siphoviridae | VOG4602, VOG1517, VOG3556, VOG0181, VOG0468, VOG4548, VOG4237, VOG5014, VOG1295, VOG0327, VOG0322, VOG5820, VOG6545, VOG3553, VOG5562, VOG4577, VOG4606, VOG4673, VOG3480, VOG4841, VOG4581, VOG4556, VOG4568, VOG4553, VOG4589, VOG1278, VOG1900, VOG4586, VOG4545, VOG4633, VOG4659 |
Phigaro v2.4.0 (Database: Jan. 2024 release)