Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DJMHCMPD_13 | 51837 | 52541 | WalR | 4.24e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DJMHCMPD_119 | 13938 | 14135 | CspR | 5.50e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DJMHCMPD_5 | 704 | 1765 | repUS74 | 1062 / 1062 | 99.81 | CP000424 |
| DJMHCMPD_141 | 2390 | 2985 | rep38 | 597 / 903 | 90.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DJMHCMPD_1 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_2 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_3 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_4 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_5 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_6 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_7 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_8 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_9 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_10 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_11 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_12 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_13 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_15 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_16 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_17 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_18 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_19 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_21 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_22 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_23 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_24 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_25 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_26 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_27 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_28 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_30 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_31 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_32 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_33 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_34 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_35 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_36 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_37 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_38 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_39 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_40 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_41 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_42 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_43 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_44 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_45 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_46 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_47 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_48 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_49 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_50 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_51 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_52 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_53 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_56 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_60 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_62 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_64 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_65 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_68 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_70 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_71 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_72 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_74 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_75 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_76 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_78 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_80 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_82 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_83 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_84 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_87 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_88 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_89 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_90 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_91 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_93 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_94 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_95 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_98 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_99 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_100 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_101 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_102 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_103 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_105 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_106 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_107 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_108 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_109 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_110 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_111 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_112 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_113 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_114 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_115 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_116 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_117 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_118 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_119 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_120 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_121 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_122 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_123 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_125 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_126 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_127 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_128 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_129 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_130 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_131 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_132 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_133 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_134 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_135 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_136 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_137 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_138 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_139 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_140 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_141 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_142 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_143 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_144 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_145 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_146 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_147 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_148 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_149 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_150 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_151 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_152 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_153 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_154 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_155 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_156 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_157 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_158 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_159 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_160 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_161 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_162 | 0.0 | 1.0 | 0.0 |
| DJMHCMPD_163 | 1.0 | 0.0 | 1.0 |
| DJMHCMPD_164 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DJMHCMPD_31 | 2002 | 31455 | False | Siphoviridae | VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG4673, VOG0744, VOG4693, VOG5562, VOG5998, VOG7363, VOG0189, VOG4566, VOG11003, VOG1309, VOG4600, VOG10867, VOG0181, VOG5353, VOG6495, VOG4602 |
| DJMHCMPD_62 | 259 | 33109 | False | Siphoviridae | VOG4570, VOG10904, VOG4549, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918, VOG0275, VOG0709, VOG3685, VOG3479, VOG6495, VOG4552, VOG0181, VOG4799, VOG0025 |
Phigaro v2.4.0 (Database: Jan. 2024 release)