Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HAOHKEIF_6 | 27983 | 27279 | WalR | 5.51e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HAOHKEIF_20 | 1944 | 1750 | CspR | 1.40e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HAOHKEIF_20 | 1944 | 1747 | CspA | 2.15e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HAOHKEIF_33 | 15370 | 16305 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HAOHKEIF_32 | 1940 | 2842 | rep38 | 903 / 903 | 99.45 | CP005943 |
| HAOHKEIF_55 | 871 | 1827 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HAOHKEIF_1 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_2 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_6 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_8 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_9 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_11 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_12 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_14 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_15 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_17 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_19 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_20 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_21 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_22 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_23 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_24 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_25 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_26 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_27 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_28 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_29 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_30 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_31 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_32 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_33 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_34 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_35 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_36 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_38 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_39 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_41 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_42 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_43 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_44 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_45 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_46 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_47 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_48 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_49 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_51 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_52 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_53 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_54 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_55 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_58 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_59 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_60 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_61 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_62 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_64 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_65 | 1.0 | 0.0 | 1.0 |
| HAOHKEIF_66 | 0.0 | 1.0 | 0.0 |
| HAOHKEIF_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HAOHKEIF_11 | 76711 | 80829 | False | Siphoviridae | VOG0181, VOG5073, VOG0685, VOG0322, VOG6545 |
| HAOHKEIF_14 | 63087 | 66061 | False | Siphoviridae | VOG0047, VOG4602, VOG9667, VOG9667, VOG6139, VOG8615 |
| HAOHKEIF_20 | 297598 | 316098 | False | Siphoviridae | VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611 |
| HAOHKEIF_29 | 1335 | 19536 | False | Siphoviridae | VOG4599, VOG4605, VOG8893, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886 |
| HAOHKEIF_30 | 1798 | 17108 | False | Siphoviridae | VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163 |
| HAOHKEIF_44 | 143801 | 172696 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG9997, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG4564, VOG0720, VOG4544, VOG0796, VOG3015, VOG0198, VOG0044 |
| HAOHKEIF_59 | 1865 | 5840 | False | Siphoviridae | VOG4636, VOG0514, VOG0226, VOG0283, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)