Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EGHPICGJ_14 | 190807 | 190109 | WalR | 3.93e-107 | transcriptional regulatory protein | 80.26 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EGHPICGJ_30 | 552 | 729 | Col(KPHS6) | 178 / 178 | 100.00 | NC016841 |
| EGHPICGJ_42 | 53 | 204 | Col156 | 152 / 154 | 98.03 | NC009781 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGHPICGJ_4 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_5 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_6 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_7 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_8 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_9 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_10 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_11 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_12 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_13 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_14 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_15 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_16 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_17 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_18 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_19 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_20 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_21 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_22 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_23 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_24 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_25 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_26 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_29 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_30 | 1.0 | 0.0 | 1.0 |
| EGHPICGJ_31 | 1.0 | 0.0 | 1.0 |
| EGHPICGJ_36 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_47 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_58 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_69 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_80 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_91 | 0.0 | 1.0 | 0.0 |
| EGHPICGJ_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGHPICGJ_4 | 31360 | 35763 | False | Siphoviridae | VOG3998, VOG2228, VOG9708, VOG0283, VOG4799, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)