Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CACHAHIC_178 | 34601 | 33897 | WalR | 5.38e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CACHAHIC_146 | 47381 | 47187 | CspR | 4.29e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CACHAHIC_146 | 47381 | 47184 | CspA | 6.57e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CACHAHIC_110 | 1546 | 2475 | rep28 | 930 / 930 | 97.42 | CP003162 |
| CACHAHIC_189 | 2046 | 3146 | repUS73 | 1101 / 1101 | 95.37 | CP002654 |
| CACHAHIC_147 | 5667 | 6333 | rep38 | 669 / 1104 | 87.00 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CACHAHIC_1 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_2 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_3 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_4 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_5 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_6 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_7 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_8 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_9 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_10 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_11 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_12 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_13 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_14 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_15 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_16 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_17 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_18 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_19 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_20 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_24 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_25 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_26 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_27 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_28 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_29 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_30 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_31 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_32 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_33 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_34 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_35 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_36 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_37 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_38 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_39 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_40 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_41 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_42 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_43 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_44 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_45 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_46 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_47 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_48 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_50 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_51 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_52 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_54 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_55 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_56 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_57 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_58 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_59 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_60 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_61 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_62 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_63 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_64 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_65 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_67 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_68 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_69 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_70 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_71 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_72 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_73 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_74 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_75 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_76 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_77 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_78 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_79 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_80 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_81 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_82 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_83 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_84 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_85 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_86 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_87 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_88 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_89 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_90 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_91 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_92 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_93 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_94 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_95 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_96 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_97 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_98 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_99 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_100 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_101 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_102 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_103 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_104 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_105 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_106 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_107 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_108 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_109 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_110 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_111 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_112 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_113 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_114 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_115 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_116 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_117 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_118 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_120 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_121 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_122 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_123 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_125 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_126 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_127 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_128 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_129 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_130 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_131 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_132 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_133 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_134 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_135 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_136 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_137 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_139 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_140 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_141 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_142 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_143 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_144 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_145 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_146 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_147 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_149 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_150 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_151 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_152 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_153 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_154 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_155 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_157 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_158 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_159 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_161 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_162 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_163 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_164 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_165 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_166 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_167 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_168 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_169 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_170 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_171 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_172 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_173 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_174 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_175 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_176 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_177 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_178 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_179 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_180 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_181 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_183 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_184 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_185 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_186 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_187 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_188 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_189 | 1.0 | 0.0 | 1.0 |
| CACHAHIC_191 | 0.0 | 1.0 | 0.0 |
| CACHAHIC_192 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CACHAHIC_87 | 3277 | 28614 | False | Siphoviridae | VOG4566, VOG4552, VOG4693, VOG0586, VOG0198, VOG0686, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG4633 |
| CACHAHIC_170 | 83835 | 96556 | False | Siphoviridae | VOG0275, VOG1563, VOG2687, VOG6294, VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568 |
Phigaro v2.4.0 (Database: Jan. 2024 release)