Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGGEEMLL_46 | 22392 | 22589 | CspA | 4.89e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| GGGEEMLL_46 | 22392 | 22586 | CspR | 8.87e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GGGEEMLL_66 | 2081 | 3115 | rep38 | 1037 / 1104 | 94.21 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGGEEMLL_1 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_2 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_3 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_4 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_5 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_6 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_7 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_8 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_9 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_10 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_11 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_12 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_14 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_15 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_16 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_17 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_18 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_20 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_21 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_22 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_23 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_24 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_25 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_26 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_27 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_28 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_29 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_30 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_31 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_32 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_33 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_34 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_35 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_36 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_37 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_38 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_39 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_40 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_41 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_42 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_43 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_44 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_45 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_46 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_47 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_48 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_49 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_51 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_52 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_53 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_54 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_55 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_56 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_57 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_58 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_59 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_60 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_61 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_62 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_63 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_65 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_66 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_67 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_68 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_69 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_70 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_71 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_72 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_73 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_74 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_75 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_76 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_77 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_78 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_79 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_80 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_81 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_82 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_83 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_86 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_87 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_88 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_89 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_90 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_91 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_92 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_93 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_94 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_95 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_96 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_98 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_99 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_100 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_101 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_102 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_103 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_104 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_105 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_106 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_107 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_108 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_109 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_110 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_111 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_112 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_113 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_114 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_115 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_116 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_117 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_118 | 1.0 | 0.0 | 1.0 |
| GGGEEMLL_119 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_121 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_122 | 0.0 | 1.0 | 0.0 |
| GGGEEMLL_123 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGGEEMLL_68 | 104764 | 141467 | False | Siphoviridae | VOG3479, VOG2540, VOG9312, VOG7340, VOG9267, VOG9667, VOG5353, VOG4552, VOG2228, VOG1309, VOG0186, VOG0226, VOG4799, VOG0198, VOG1315, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG4317, VOG0207, VOG4586, VOG0209, VOG0083, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4687, VOG8917, VOG9091 |
| GGGEEMLL_78 | 14749 | 29212 | False | Myoviridae | VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083 |
| GGGEEMLL_79 | 30401 | 42577 | False | Myoviridae / Siphoviridae | VOG9967, VOG1292, VOG4624, VOG1355, VOG0275, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)