Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FCHKLKPK_17 | 25536 | 25733 | CspA | 5.32e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| FCHKLKPK_17 | 25536 | 25730 | CspR | 9.63e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCHKLKPK_1 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_2 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_3 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_4 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_5 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_6 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_7 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_8 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_9 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_10 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_12 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_13 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_14 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_16 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_17 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_18 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_19 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_20 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_22 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_23 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_24 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_25 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_26 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_28 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_29 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_30 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_31 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_32 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_33 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_34 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_35 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_36 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_37 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_38 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_39 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_40 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_41 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_42 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_43 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_44 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_45 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_47 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_49 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_50 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_52 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_53 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_54 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_55 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_56 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_57 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_58 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_59 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_60 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_61 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_62 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_63 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_64 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_65 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_66 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_67 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_68 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_69 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_70 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_71 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_72 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_74 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_75 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_76 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_77 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_78 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_79 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_81 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_82 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_84 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_85 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_88 | 1.0 | 0.0 | 1.0 |
| FCHKLKPK_89 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_90 | 0.0 | 1.0 | 0.0 |
| FCHKLKPK_91 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCHKLKPK_29 | 12163 | 41865 | False | Siphoviridae | VOG0189, VOG8685, VOG4693, VOG0198, VOG4440, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223, VOG1637, VOG0703 |
| FCHKLKPK_30 | 116402 | 144579 | False | Siphoviridae | VOG0189, VOG8685, VOG4693, VOG0198, VOG4440, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223 |
| FCHKLKPK_42 | 13534 | 31290 | False | Myoviridae | VOG10457, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083 |
Phigaro v2.4.0 (Database: Jan. 2024 release)