Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ECEPKDMB_1 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_9 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_10 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_11 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_12 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_13 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_14 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_15 | 0.0 | 1.0 | 0.0 |
| ECEPKDMB_16 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ECEPKDMB_9 | 1096 | 20979 | False | Siphoviridae | VOG0204, VOG0205, VOG8609, VOG0207, VOG4586, VOG0209, VOG4545, VOG4633, VOG5924, VOG9945, VOG4705, VOG0861, VOG5087, VOG0703 |
| ECEPKDMB_9 | 309328 | 336913 | False | Siphoviridae | VOG8294, VOG0703, VOG5087, VOG0861, VOG0648, VOG5007, VOG10608, VOG1335, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689 |
| ECEPKDMB_9 | 508077 | 535502 | False | Myoviridae | VOG4705, VOG9945, VOG4783, VOG4687, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG5835, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4711, VOG10914, VOG10527, VOG4564, VOG0720, VOG4544, VOG0796, VOG0198, VOG6253, VOG4693, VOG0634 |
| ECEPKDMB_9 | 536149 | 543679 | False | Siphoviridae | VOG4579, VOG0195, VOG0275, VOG0189, VOG4566, VOG0283, VOG2228, VOG4552, VOG9667 |
| ECEPKDMB_10 | 257621 | 278780 | False | Siphoviridae | VOG0703, VOG0686, VOG9888, VOG0861, VOG5008, VOG10972, VOG6163, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG0327 |
| ECEPKDMB_10 | 279679 | 285639 | False | Myoviridae / Siphoviridae | VOG5880, VOG4609, VOG4632, VOG6545, VOG0322, VOG6414 |
Phigaro v2.4.0 (Database: Jan. 2024 release)