Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EAGOFBMF_64 | 97424 | 97618 | CspA | 6.59e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EAGOFBMF_1 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_2 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_3 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_4 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_5 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_6 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_7 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_8 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_9 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_10 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_11 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_12 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_13 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_14 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_15 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_16 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_17 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_18 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_19 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_20 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_21 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_22 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_23 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_24 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_25 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_26 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_27 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_28 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_29 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_30 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_31 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_32 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_33 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_34 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_36 | 1.0 | 0.0 | 1.0 |
| EAGOFBMF_44 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_55 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_62 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_63 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_64 | 0.0 | 1.0 | 0.0 |
| EAGOFBMF_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EAGOFBMF_10 | 5202 | 36720 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5370, VOG1183, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648, VOG0641 |
| EAGOFBMF_13 | 10760 | 30621 | False | Siphoviridae | VOG5722, VOG4544, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG9713, VOG5534, VOG4783, VOG10609, VOG9091, VOG0648 |
| EAGOFBMF_22 | 89689 | 116846 | False | Siphoviridae | VOG0686, VOG0198, VOG6183, VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG0083, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)