Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OJNLAHCL_67 | 42643 | 42837 | CspA | 9.99e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OJNLAHCL_1 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_2 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_3 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_4 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_5 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_6 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_7 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_8 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_9 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_10 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_11 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_13 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_14 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_15 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_17 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_19 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_20 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_21 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_23 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_24 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_27 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_36 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_44 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_51 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_52 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_53 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_54 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_55 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_56 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_57 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_58 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_59 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_60 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_61 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_62 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_63 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_64 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_65 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_66 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_67 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_68 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_69 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_70 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_71 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_72 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_73 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_74 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_75 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_76 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_77 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_78 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_79 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_80 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_81 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_82 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_83 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_84 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_85 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_86 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_87 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_88 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_89 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_90 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_91 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_92 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_93 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_94 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_95 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_96 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_97 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_98 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_99 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_100 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_101 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_102 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_103 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_104 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_105 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_106 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_107 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_108 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_109 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_110 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_111 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_112 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_113 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_114 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_115 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_116 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_117 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_118 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_119 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_120 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_121 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_122 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_123 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_124 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_125 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_126 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_127 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_128 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_129 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_130 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_131 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_132 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_133 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_134 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_135 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_136 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_137 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_138 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_139 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_140 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_141 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_142 | 1.0 | 0.0 | 1.0 |
| OJNLAHCL_143 | 0.0 | 1.0 | 0.0 |
| OJNLAHCL_144 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OJNLAHCL_11 | 1952 | 7208 | False | Siphoviridae | VOG4237, VOG2336, VOG8192, VOG0198, VOG5660, VOG4545 |
| OJNLAHCL_55 | 1394 | 20047 | False | Siphoviridae | VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0195 |
Phigaro v2.4.0 (Database: Jan. 2024 release)