Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKHNPIKN_111 | 64040 | 64942 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| GKHNPIKN_81 | 1 | 1470 | tet(Q) | ARO:3000191 | tet(Q) | 97.38 | 74.58 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GKHNPIKN_111 | 64040 | 64942 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | FR688022 |
| GKHNPIKN_81 | 95 | 1471 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.89 | 71.50 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKHNPIKN_111 | 64043 | 64942 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| GKHNPIKN_81 | 97 | 1470 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.38 | 71.45 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKHNPIKN_1 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_2 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_3 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_4 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_5 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_6 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_7 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_8 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_9 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_10 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_11 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_12 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_13 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_14 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_15 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_16 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_17 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_19 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_20 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_21 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_22 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_23 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_24 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_25 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_26 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_27 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_28 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_29 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_30 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_31 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_32 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_33 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_34 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_35 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_36 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_37 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_38 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_39 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_40 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_41 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_42 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_43 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_44 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_45 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_46 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_47 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_49 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_50 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_51 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_52 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_53 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_54 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_55 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_56 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_57 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_58 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_59 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_60 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_61 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_62 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_63 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_64 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_65 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_66 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_67 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_68 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_69 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_70 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_71 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_72 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_73 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_74 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_75 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_76 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_77 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_78 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_79 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_80 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_81 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_82 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_83 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_84 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_85 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_86 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_87 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_88 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_89 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_90 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_91 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_92 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_93 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_94 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_95 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_96 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_97 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_98 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_99 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_100 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_101 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_102 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_103 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_104 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_105 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_106 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_107 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_108 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_109 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_110 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_111 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_112 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_113 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_114 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_115 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_116 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_117 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_118 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_119 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_120 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_121 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_122 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_123 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_124 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_125 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_126 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_127 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_128 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_129 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_130 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_131 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_132 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_133 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_134 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_135 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_136 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_137 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_138 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_139 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_140 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_141 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_142 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_143 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_144 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_145 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_146 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_147 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_148 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_149 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_150 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_155 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_166 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_177 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_188 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_199 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_210 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_221 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_222 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_233 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_244 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_255 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_266 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_277 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_288 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_299 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_310 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_321 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_331 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_332 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_343 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_354 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_365 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_376 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_387 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_398 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_409 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_420 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_431 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_442 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_443 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_454 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_465 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_476 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_479 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_480 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_481 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_482 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_483 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_484 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_485 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_486 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_487 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_488 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_489 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_490 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_491 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_492 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_493 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_494 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_495 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_496 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_497 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_498 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_499 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_500 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_501 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_502 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_503 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_504 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_505 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_506 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_507 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_508 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_509 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_510 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_511 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_512 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_513 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_514 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_515 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_517 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_518 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_519 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_520 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_521 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_522 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_523 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_524 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_525 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_526 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_527 | 1.0 | 0.0 | 1.0 |
| GKHNPIKN_528 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_529 | 0.0 | 1.0 | 0.0 |
| GKHNPIKN_530 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKHNPIKN_44 | 7014 | 14991 | False | Siphoviridae | VOG0704, |
Phigaro v2.4.0 (Database: Jan. 2024 release)