Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEPOKCAC_9 | 35646 | 39209 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.91 | 100.08 | NC_008618.1 |
| JEPOKCAC_28 | 1557 | 2411 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JEPOKCAC_28 | 1557 | 2319 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEPOKCAC_28 | 1557 | 2408 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEPOKCAC_1 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_2 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_3 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_4 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_5 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_6 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_7 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_8 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_9 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_10 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_11 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_12 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_13 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_14 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_15 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_16 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_17 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_18 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_19 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_20 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_21 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_22 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_23 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_24 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_25 | 1.0 | 0.0 | 1.0 |
| JEPOKCAC_26 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_27 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_28 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_29 | 1.0 | 0.0 | 1.0 |
| JEPOKCAC_30 | 1.0 | 0.0 | 1.0 |
| JEPOKCAC_32 | 1.0 | 0.0 | 1.0 |
| JEPOKCAC_33 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_34 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_35 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_36 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_37 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_39 | 1.0 | 0.0 | 1.0 |
| JEPOKCAC_40 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_41 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_42 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_43 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_44 | 1.0 | 0.0 | 1.0 |
| JEPOKCAC_45 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_56 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_67 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_78 | 0.0 | 1.0 | 0.0 |
| JEPOKCAC_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEPOKCAC_23 | 130819 | 143427 | False | Siphoviridae | VOG1581, VOG1887, VOG3434, VOG4555, VOG2806, VOG0720, VOG5101, VOG1574, VOG6459, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)