Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJNPCMFO_11 | 45106 | 45996 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| LJNPCMFO_86 | 21005 | 22210 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LJNPCMFO_22 | 3614 | 4477 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| LJNPCMFO_22 | 2302 | 3438 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| LJNPCMFO_22 | 964 | 2103 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| LJNPCMFO_76 | 777 | 2405 | tet(Q) | ARO:3000191 | tet(Q) | 97.42 | 82.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJNPCMFO_22 | 2272 | 3438 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| LJNPCMFO_22 | 78 | 658 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.83 | 72.53 | M62487 |
| LJNPCMFO_76 | 825 | 2407 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.99 | 82.19 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJNPCMFO_22 | 3614 | 4474 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LJNPCMFO_11 | 45109 | 45996 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| LJNPCMFO_22 | 2272 | 3435 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| LJNPCMFO_86 | 20504 | 20980 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 100.00 | 93.53 | WP_004308783.1 |
| LJNPCMFO_22 | 964 | 2100 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| LJNPCMFO_86 | 21008 | 22210 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| LJNPCMFO_22 | 80 | 658 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 99.48 | 72.56 | WP_063844771.1 |
| LJNPCMFO_76 | 825 | 2405 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.05 | 82.22 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJNPCMFO_1 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_2 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_3 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_4 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_5 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_6 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_7 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_8 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_9 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_10 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_11 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_12 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_13 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_14 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_15 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_16 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_17 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_18 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_19 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_20 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_21 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_22 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_23 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_24 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_25 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_26 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_27 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_28 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_29 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_30 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_31 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_32 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_33 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_34 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_35 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_36 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_37 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_38 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_39 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_40 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_41 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_42 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_43 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_44 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_45 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_46 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_47 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_48 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_49 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_50 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_51 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_52 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_53 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_54 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_55 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_56 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_57 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_58 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_59 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_61 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_62 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_63 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_64 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_65 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_66 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_67 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_68 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_69 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_70 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_71 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_72 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_73 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_74 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_75 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_76 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_77 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_78 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_79 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_80 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_81 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_82 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_83 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_84 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_85 | 1.0 | 0.0 | 1.0 |
| LJNPCMFO_86 | 0.0 | 1.0 | 0.0 |
| LJNPCMFO_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJNPCMFO_22 | 159870 | 171150 | False | Siphoviridae | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)