Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 0 | 0 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBONCOOH_61 | 281953 | 282918 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| PBONCOOH_3 | 150964 | 151602 | ErmG | ARO:3000522 | ErmG | 99.52 | 86.89 | L42817.1 |
| PBONCOOH_11 | 129845 | 131819 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| PBONCOOH_4 | 128164 | 129369 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| PBONCOOH_4 | 53385 | 54590 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBONCOOH_61 | 281953 | 282918 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| PBONCOOH_11 | 129845 | 131770 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PBONCOOH_17 | 69068 | 69934 | ant(6)-Ia | Streptomycin | 99.88 | 100.00 | KF864551 |
| PBONCOOH_3 | 150867 | 151602 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 100.00 | M15332 |
| PBONCOOH_3 | 152374 | 153837 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| PBONCOOH_3 | 153963 | 155177 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBONCOOH_17 | 69071 | 69934 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| PBONCOOH_61 | 281953 | 282915 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| PBONCOOH_4 | 129394 | 129903 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PBONCOOH_4 | 54615 | 55124 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PBONCOOH_11 | 129848 | 131770 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PBONCOOH_3 | 150976 | 151602 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | PARTIALX | 99.52 | 85.66 | WP_014387027.1 |
| PBONCOOH_4 | 128164 | 129366 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PBONCOOH_4 | 53385 | 54587 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PBONCOOH_3 | 152377 | 153837 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| PBONCOOH_3 | 153954 | 155177 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBONCOOH_1 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_2 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_3 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_4 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_5 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_6 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_7 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_8 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_9 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_10 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_11 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_12 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_13 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_14 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_15 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_16 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_17 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_18 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_19 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_20 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_21 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_22 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_23 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_24 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_25 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_26 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_27 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_28 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_29 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_30 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_31 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_32 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_33 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_34 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_35 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_36 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_37 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_38 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_39 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_40 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_41 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_42 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_44 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_45 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_46 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_47 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_48 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_49 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_50 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_51 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_52 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_53 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_54 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_55 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_56 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_57 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_58 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_59 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_60 | 1.0 | 0.0 | 1.0 |
| PBONCOOH_61 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_62 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_63 | 0.0 | 1.0 | 0.0 |
| PBONCOOH_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBONCOOH_44 | 48260 | 56891 | False | Unknown | VOG0226, |
| PBONCOOH_44 | 69397 | 78585 | False | Unknown | VOG1031, |
Phigaro v2.4.0 (Database: Jan. 2024 release)