Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AAPOPFBJ_43 | 34473 | 35207 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| AAPOPFBJ_40 | 18046 | 19971 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| AAPOPFBJ_81 | 930 | 2903 | tet(Q) | ARO:3000191 | tet(Q) | 97.87 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AAPOPFBJ_43 | 34473 | 35207 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| AAPOPFBJ_72 | 8234 | 8919 | cfxA3 | Ampicillin | 100.00 | 71.01 | AF472622 |
| AAPOPFBJ_81 | 930 | 2855 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.98 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AAPOPFBJ_43 | 34473 | 35204 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| AAPOPFBJ_72 | 8237 | 8917 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | PARTIAL_CONTIG_ENDX | 100.00 | 70.72 | WP_004348227.1 |
| AAPOPFBJ_81 | 933 | 2855 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_002560998.1 |
| AAPOPFBJ_40 | 18049 | 19971 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AAPOPFBJ_1 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_2 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_3 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_4 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_5 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_6 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_7 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_8 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_9 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_10 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_11 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_12 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_13 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_14 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_15 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_16 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_17 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_18 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_19 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_20 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_21 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_22 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_23 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_24 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_25 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_26 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_27 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_28 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_29 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_30 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_31 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_32 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_33 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_34 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_35 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_36 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_37 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_38 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_39 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_40 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_41 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_42 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_43 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_44 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_45 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_46 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_47 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_48 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_49 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_50 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_51 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_52 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_53 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_54 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_55 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_56 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_57 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_58 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_59 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_60 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_61 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_62 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_63 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_64 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_65 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_66 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_67 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_68 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_69 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_70 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_71 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_72 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_73 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_74 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_75 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_77 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_78 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_79 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_80 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_81 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_82 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_83 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_84 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_85 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_86 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_87 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_88 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_89 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_90 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_91 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_92 | 0.0 | 1.0 | 0.0 |
| AAPOPFBJ_93 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_94 | 1.0 | 0.0 | 1.0 |
| AAPOPFBJ_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AAPOPFBJ_13 | 56686 | 65325 | False | Siphoviridae | VOG7238, |
| AAPOPFBJ_18 | 14065 | 26069 | False | Siphoviridae | VOG5235, |
| AAPOPFBJ_32 | 10714 | 20415 | False | Unknown | VOG5562, |
Phigaro v2.4.0 (Database: Jan. 2024 release)