Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCBHJAMM_23 | 44165 | 45796 | ErmF | ARO:3000498 | ErmF | 99.62 | 204.14 | M17124.1 |
| PCBHJAMM_23 | 42816 | 43952 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| PCBHJAMM_23 | 17379 | 19304 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PCBHJAMM_39 | 862 | 1827 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCBHJAMM_23 | 44165 | 44965 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| PCBHJAMM_23 | 42786 | 43952 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| PCBHJAMM_39 | 862 | 1827 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| PCBHJAMM_39 | 862 | 1827 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| PCBHJAMM_39 | 862 | 1827 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| PCBHJAMM_39 | 862 | 1827 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| PCBHJAMM_23 | 17379 | 19304 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCBHJAMM_39 | 862 | 1824 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| PCBHJAMM_23 | 44168 | 44965 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| PCBHJAMM_23 | 42786 | 43949 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| PCBHJAMM_23 | 17382 | 19304 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PCBHJAMM_50 | 692 | 1371 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCBHJAMM_1 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_2 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_3 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_4 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_5 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_6 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_7 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_8 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_9 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_10 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_11 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_12 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_13 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_14 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_15 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_16 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_17 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_18 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_19 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_20 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_21 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_22 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_23 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_24 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_25 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_26 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_27 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_28 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_29 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_30 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_31 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_32 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_33 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_34 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_35 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_36 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_37 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_38 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_39 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_40 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_41 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_42 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_44 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_45 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_46 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_47 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_48 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_49 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_50 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_51 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_52 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_53 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_54 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_55 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_56 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_57 | 1.0 | 0.0 | 1.0 |
| PCBHJAMM_58 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_59 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_60 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_61 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_62 | 0.0 | 1.0 | 0.0 |
| PCBHJAMM_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCBHJAMM_11 | 343252 | 352678 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)