Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EIFKOHGC_34 | 64361 | 63657 | WalR | 2.43e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| EIFKOHGC_21 | 16789 | 16986 | CspR | 1.11e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EIFKOHGC_40 | 28331 | 29389 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EIFKOHGC_1 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_2 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_3 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_4 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_5 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_6 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_7 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_8 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_9 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_10 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_11 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_13 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_14 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_15 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_16 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_17 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_18 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_19 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_20 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_21 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_22 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_23 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_24 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_26 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_27 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_28 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_29 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_30 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_31 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_32 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_33 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_34 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_35 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_36 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_37 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_38 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_39 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_40 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_41 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_43 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_49 | 0.0 | 1.0 | 0.0 |
| EIFKOHGC_50 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_51 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_52 | 1.0 | 0.0 | 1.0 |
| EIFKOHGC_53 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EIFKOHGC_16 | 59409 | 72225 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589, VOG8284 |
| EIFKOHGC_21 | 37704 | 42534 | False | Unknown | VOG8241, VOG0535, VOG0322, VOG0226, VOG0189 |
| EIFKOHGC_21 | 51390 | 72560 | False | Siphoviridae | VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4711, VOG3480, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG9763, VOG0701, VOG4705, VOG4605, VOG4599, VOG4705, VOG0861, VOG7017 |
| EIFKOHGC_29 | 234360 | 276559 | False | Siphoviridae | VOG6083, VOG4649, VOG0602, VOG7017, VOG0861, VOG4683, VOG4619, VOG0801, VOG4545, VOG1323, VOG0725, VOG0799, VOG1321, VOG5660, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG1183, VOG4564, VOG0720, VOG10227, VOG3699, VOG0822, VOG4570, VOG0198, VOG2338, VOG7530, VOG9280, VOG0044, VOG9671, VOG3643, VOG0152, VOG4567, VOG4693, VOG6623, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309, VOG2338 |
| EIFKOHGC_34 | 130836 | 140794 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)