Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKOFKMPJ_5 | 74726 | 74022 | WalR | 8.28e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LKOFKMPJ_1 | 108821 | 108627 | CspR | 7.98e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LKOFKMPJ_1 | 108821 | 108624 | CspA | 1.22e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LKOFKMPJ_1 | 177349 | 178383 | rep38 | 1046 / 1104 | 83.27 | CP002655 |
| LKOFKMPJ_81 | 937 | 1892 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKOFKMPJ_1 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_2 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_3 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_4 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_5 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_6 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_7 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_8 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_9 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_10 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_11 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_12 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_13 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_14 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_15 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_16 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_17 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_18 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_19 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_20 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_21 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_22 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_23 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_24 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_25 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_26 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_27 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_28 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_29 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_30 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_31 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_32 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_33 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_34 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_35 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_36 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_37 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_38 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_39 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_40 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_41 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_42 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_43 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_44 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_45 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_46 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_47 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_48 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_49 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_50 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_51 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_52 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_53 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_54 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_55 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_56 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_57 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_58 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_59 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_60 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_61 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_62 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_63 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_64 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_65 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_66 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_67 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_68 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_70 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_71 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_72 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_73 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_74 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_75 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_76 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_77 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_78 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_79 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_80 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_81 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_82 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_83 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_84 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_85 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_86 | 0.0 | 1.0 | 0.0 |
| LKOFKMPJ_87 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_88 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_89 | 1.0 | 0.0 | 1.0 |
| LKOFKMPJ_90 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKOFKMPJ_20 | 3868 | 36640 | False | Siphoviridae | VOG0054, VOG0753, VOG8294, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044, VOG10015, VOG4693, VOG0189, VOG4636, VOG0514, VOG6545, VOG0322 |
| LKOFKMPJ_34 | 3715 | 25978 | False | Siphoviridae | VOG7896, VOG4879, VOG4856, VOG3462, VOG0801, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG3015 |
| LKOFKMPJ_38 | 12471 | 23136 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4553, VOG0204, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)