Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPCJNCMD_1 | 32064 | 32765 | WalR | 3.25e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CPCJNCMD_6 | 1 | 936 | rep28 | 936 / 936 | 99.47 | CP005948 |
| CPCJNCMD_4 | 10354 | 11388 | rep38 | 1044 / 1104 | 84.10 | CP002655 |
| CPCJNCMD_7 | 3238 | 4374 | rep32 | 1156 / 1161 | 81.57 | AL592102 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPCJNCMD_1 | 0.0 | 1.0 | 0.0 |
| CPCJNCMD_2 | 1.0 | 0.0 | 1.0 |
| CPCJNCMD_3 | 1.0 | 0.0 | 1.0 |
| CPCJNCMD_4 | 1.0 | 0.0 | 1.0 |
| CPCJNCMD_5 | 1.0 | 0.0 | 1.0 |
| CPCJNCMD_6 | 1.0 | 0.0 | 1.0 |
| CPCJNCMD_7 | 1.0 | 0.0 | 1.0 |
| CPCJNCMD_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPCJNCMD_1 | 1281778 | 1318715 | False | Myoviridae | VOG0703, VOG0641, VOG3298, VOG3298, VOG1857, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG2621, VOG1887, VOG3434, VOG4564, VOG0720, VOG7407, VOG0052, VOG5343, VOG4214, VOG0143, VOG0198, VOG6005, VOG4693, VOG7236, VOG4855, VOG0186, VOG1309 |
| CPCJNCMD_1 | 2041804 | 2047882 | True | Unknown | VOG7892, VOG2154, VOG0275, VOG5088, VOG0275, VOG3449, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)