Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCGIKDGB_49 | 102093 | 102794 | WalR | 1.51e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCGIKDGB_1 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_2 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_3 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_4 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_5 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_6 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_7 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_8 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_9 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_10 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_11 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_12 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_13 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_14 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_15 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_16 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_17 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_18 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_19 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_20 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_21 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_22 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_23 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_24 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_25 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_26 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_27 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_28 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_29 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_30 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_31 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_32 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_33 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_36 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_37 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_38 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_39 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_40 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_41 | 1.0 | 0.0 | 1.0 |
| OCGIKDGB_44 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_48 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_49 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_55 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_56 | 0.0 | 1.0 | 0.0 |
| OCGIKDGB_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCGIKDGB_11 | 165016 | 198221 | False | Siphoviridae | VOG1302, VOG0650, VOG8222, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG4673, VOG7110, VOG0376, VOG0198, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0539, VOG0207, VOG4586, VOG0209, VOG6163, VOG4605, VOG4599, VOG7892, VOG0703, VOG1637 |
| OCGIKDGB_11 | 259959 | 295043 | False | Myoviridae | VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044, VOG4010, VOG0198, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6131, VOG5068, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4894, VOG0565, VOG3298 |
| OCGIKDGB_12 | 5985 | 11605 | False | Myoviridae / Siphoviridae | VOG0464, VOG0283, VOG0226, VOG0514, VOG8647, VOG0189, VOG3003, VOG0822 |
| OCGIKDGB_12 | 14867 | 38593 | False | Myoviridae | VOG10227, VOG0720, VOG4564, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG6684, VOG5904, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG6540, VOG4705, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)