Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PNKMFCMP_2 | 55716 | 56417 | WalR | 1.04e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNKMFCMP_1 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_2 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_3 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_4 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_5 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_6 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_7 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_8 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_9 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_10 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_11 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_12 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_13 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_14 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_15 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_16 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_17 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_18 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_19 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_21 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_22 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_23 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_25 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_26 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_27 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_28 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_29 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_30 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_31 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_32 | 1.0 | 0.0 | 1.0 |
| PNKMFCMP_33 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_41 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_44 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_47 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_54 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_55 | 0.0 | 1.0 | 0.0 |
| PNKMFCMP_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNKMFCMP_22 | 174798 | 209259 | False | Myoviridae | VOG5087, VOG0861, VOG7896, VOG6540, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG8263, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4918, VOG4564, VOG1912, VOG10227, VOG2649, VOG4544, VOG0796, VOG0045, VOG0638, VOG0198, VOG0707, VOG4552, VOG9667, VOG0189, VOG8647, VOG0186, VOG1309 |
| PNKMFCMP_22 | 238943 | 268813 | False | Myoviridae | VOG3298, VOG0565, VOG0870, VOG4845, VOG4691, VOG4550, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG0569, VOG4778, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG4214 |
| PNKMFCMP_22 | 276651 | 280687 | False | Siphoviridae | VOG5107, VOG5458, VOG6495, VOG11003, VOG6974, VOG1638, VOG0787, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)