Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JHNADMDC_22 | 12571 | 12374 | CspA | 6.83e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| JHNADMDC_22 | 12571 | 12377 | CspR | 2.96e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHNADMDC_1 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_2 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_3 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_4 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_5 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_6 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_7 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_8 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_9 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_10 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_11 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_12 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_13 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_14 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_15 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_16 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_17 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_18 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_19 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_20 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_21 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_22 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_23 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_24 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_25 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_26 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_27 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_28 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_29 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_30 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_31 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_32 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_33 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_34 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_35 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_36 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_37 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_38 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_39 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_40 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_41 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_42 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_43 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_44 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_45 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_46 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_47 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_48 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_49 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_50 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_51 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_52 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_53 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_54 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_55 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_56 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_57 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_58 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_59 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_60 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_61 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_62 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_63 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_64 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_65 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_66 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_67 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_68 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_69 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_70 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_71 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_72 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_73 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_74 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_75 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_76 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_77 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_79 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_80 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_81 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_82 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_83 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_84 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_85 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_86 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_87 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_88 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_89 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_90 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_91 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_92 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_93 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_94 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_96 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_97 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_98 | 0.0 | 1.0 | 0.0 |
| JHNADMDC_99 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_100 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_101 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_102 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_103 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_104 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_105 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_106 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_107 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_108 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_109 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_110 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_111 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_112 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_113 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_114 | 1.0 | 0.0 | 1.0 |
| JHNADMDC_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHNADMDC_14 | 24933 | 37961 | False | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226 |
| JHNADMDC_15 | 2761 | 34415 | False | Siphoviridae | VOG9667, VOG2228, VOG0321, VOG0322, VOG4548, VOG6545, VOG4606, VOG0327, VOG8685, VOG0198, VOG4841, VOG4581, VOG1886, VOG10142, VOG4556, VOG4568, VOG0204, VOG0205, VOG4317, VOG0207, VOG0209, VOG6163, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG10899, VOG4687 |
Phigaro v2.4.0 (Database: Jan. 2024 release)