Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JGECHEKI_86 | 2960 | 3521 | rep38 | 564 / 903 | 81.21 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGECHEKI_5 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_8 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_11 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_12 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_18 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_19 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_21 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_22 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_25 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_26 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_27 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_29 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_30 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_31 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_32 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_35 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_36 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_37 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_38 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_40 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_41 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_42 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_43 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_44 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_47 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_48 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_49 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_50 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_52 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_53 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_54 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_55 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_57 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_58 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_60 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_61 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_62 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_65 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_71 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_77 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_79 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_80 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_81 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_83 | 0.0 | 1.0 | 0.0 |
| JGECHEKI_84 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_85 | 1.0 | 0.0 | 1.0 |
| JGECHEKI_86 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGECHEKI_50 | 14557 | 36354 | False | Myoviridae | VOG0796, VOG0720, VOG4564, VOG4555, VOG4572, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG3636, VOG4865, VOG4885, VOG3894, VOG4691, VOG4862, VOG1900, VOG9945, VOG4705, VOG0861 |
Phigaro v2.4.0 (Database: Jan. 2024 release)