Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIPNOMAL_6 | 55569 | 57491 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AIPNOMAL_6 | 55569 | 57482 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 99.69 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIPNOMAL_6 | 55569 | 57482 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AIPNOMAL_10 | 8877 | 9911 | rep38 | 1042 / 1104 | 80.23 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AIPNOMAL_2 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_3 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_4 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_5 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_6 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_7 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_8 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_9 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_10 | 1.0 | 0.0 | 1.0 |
| AIPNOMAL_11 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_12 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_14 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_15 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_16 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_17 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_18 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_19 | 1.0 | 0.0 | 1.0 |
| AIPNOMAL_20 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_21 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_22 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_23 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_26 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_27 | 1.0 | 0.0 | 1.0 |
| AIPNOMAL_28 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_29 | 1.0 | 0.0 | 1.0 |
| AIPNOMAL_32 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_35 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_36 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_38 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_39 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_40 | 0.0 | 1.0 | 0.0 |
| AIPNOMAL_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)