Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APCNLMHO_11 | 23715 | 24617 | CepA-29 | ARO:3006224 | CepA-29 | 99.67 | 100.00 | NG_050385.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| APCNLMHO_11 | 23715 | 24617 | cepA-29 | Unknown Beta-lactam | 99.78 | 100.00 | U05884 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APCNLMHO_11 | 23718 | 24617 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_063865204.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| APCNLMHO_1 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_2 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_3 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_4 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_5 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_6 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_7 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_8 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_9 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_10 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_11 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_12 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_13 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_14 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_15 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_16 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_17 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_18 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_19 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_20 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_21 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_22 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_23 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_24 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_25 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_26 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_27 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_28 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_29 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_31 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_32 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_33 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_35 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_37 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_38 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_39 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_40 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_41 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_42 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_43 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_44 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_45 | 1.0 | 0.0 | 1.0 |
| APCNLMHO_53 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_63 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_70 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_78 | 0.0 | 1.0 | 0.0 |
| APCNLMHO_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)