Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 0 | 0 | 9.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGDDBEKF_4 | 122054 | 122956 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| NGDDBEKF_32 | 24330 | 26234 | tet(Q) | ARO:3000191 | tet(Q) | 97.00 | 96.50 | Z21523.1 |
| NGDDBEKF_45 | 17780 | 18643 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| NGDDBEKF_45 | 16468 | 17604 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| NGDDBEKF_45 | 15130 | 16269 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| NGDDBEKF_45 | 14024 | 14824 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| NGDDBEKF_16 | 9942 | 11147 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGDDBEKF_4 | 122054 | 122956 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | L13472 |
| NGDDBEKF_32 | 24330 | 26236 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 99.01 | X58717 |
| NGDDBEKF_45 | 14024 | 14824 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| NGDDBEKF_45 | 16438 | 17604 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGDDBEKF_45 | 17780 | 18640 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| NGDDBEKF_58 | 184803 | 185708 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| NGDDBEKF_4 | 122054 | 122953 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| NGDDBEKF_16 | 11172 | 11681 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| NGDDBEKF_45 | 16438 | 17601 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| NGDDBEKF_32 | 24333 | 26234 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 100.00 | 98.91 | WP_004293868.1 |
| NGDDBEKF_45 | 15130 | 16266 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| NGDDBEKF_45 | 14027 | 14824 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| NGDDBEKF_16 | 9942 | 11144 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NGDDBEKF_50 | 1741 | 2420 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGDDBEKF_1 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_3 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_4 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_5 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_6 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_7 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_8 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_9 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_10 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_11 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_12 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_13 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_14 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_15 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_16 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_17 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_18 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_19 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_20 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_21 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_22 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_23 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_24 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_25 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_26 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_27 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_28 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_29 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_30 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_31 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_32 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_33 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_34 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_35 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_36 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_37 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_38 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_39 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_40 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_41 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_42 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_43 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_44 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_45 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_47 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_48 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_49 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_50 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_51 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_52 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_53 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_54 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_55 | 1.0 | 0.0 | 1.0 |
| NGDDBEKF_56 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_58 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_59 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_61 | 0.0 | 1.0 | 0.0 |
| NGDDBEKF_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGDDBEKF_14 | 86386 | 90900 | False | Unknown | VOG4567, |
Phigaro v2.4.0 (Database: Jan. 2024 release)