Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BIFJOJEF_41 | 261713 | 262615 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| BIFJOJEF_41 | 131686 | 133611 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| BIFJOJEF_15 | 862 | 1827 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BIFJOJEF_41 | 261713 | 262615 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| BIFJOJEF_41 | 131686 | 133611 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| BIFJOJEF_15 | 862 | 1827 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| BIFJOJEF_15 | 862 | 1827 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| BIFJOJEF_15 | 862 | 1827 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| BIFJOJEF_15 | 862 | 1827 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BIFJOJEF_41 | 261713 | 262612 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| BIFJOJEF_15 | 862 | 1824 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| BIFJOJEF_41 | 131689 | 133611 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BIFJOJEF_23 | 66 | 745 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BIFJOJEF_1 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_2 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_3 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_4 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_5 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_6 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_7 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_8 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_9 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_10 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_11 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_12 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_13 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_14 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_15 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_16 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_17 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_19 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_20 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_21 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_22 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_23 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_24 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_25 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_26 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_27 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_28 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_29 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_30 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_31 | 1.0 | 0.0 | 1.0 |
| BIFJOJEF_32 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_37 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_41 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_44 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_45 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_46 | 0.0 | 1.0 | 0.0 |
| BIFJOJEF_47 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BIFJOJEF_1 | 123636 | 136345 | False | Siphoviridae | VOG3349, |
Phigaro v2.4.0 (Database: Jan. 2024 release)