Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDPDGBJP_72 | 144213 | 146138 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HDPDGBJP_21 | 83860 | 84594 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDPDGBJP_72 | 144213 | 146138 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HDPDGBJP_21 | 83860 | 84594 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| HDPDGBJP_21 | 81625 | 83088 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| HDPDGBJP_21 | 80285 | 81499 | mef(A) | Erythromycin, Azithromycin | 94.40 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDPDGBJP_21 | 83860 | 84591 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| HDPDGBJP_72 | 144216 | 146138 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HDPDGBJP_21 | 80285 | 81508 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.04 | 100.00 | WP_012102963.1 |
| HDPDGBJP_21 | 81625 | 83085 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDPDGBJP_83 | 210666 | 209086 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HDPDGBJP_121 | 2036 | 2616 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDPDGBJP_1 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_2 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_3 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_4 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_6 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_12 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_13 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_17 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_21 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_24 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_30 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_35 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_39 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_43 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_44 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_48 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_52 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_53 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_54 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_55 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_56 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_57 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_58 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_59 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_60 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_61 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_62 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_63 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_64 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_65 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_66 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_67 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_68 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_69 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_70 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_71 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_72 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_73 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_74 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_75 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_76 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_77 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_78 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_79 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_80 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_81 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_82 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_83 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_84 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_85 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_86 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_87 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_88 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_89 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_90 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_91 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_92 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_93 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_94 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_95 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_96 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_97 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_98 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_99 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_100 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_101 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_102 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_103 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_104 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_105 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_107 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_108 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_109 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_110 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_111 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_112 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_113 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_114 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_115 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_116 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_117 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_118 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_119 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_120 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_121 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_122 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_123 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_124 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_125 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_126 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_127 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_128 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_129 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_130 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_131 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_132 | 1.0 | 0.0 | 1.0 |
| HDPDGBJP_133 | 0.0 | 1.0 | 0.0 |
| HDPDGBJP_134 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDPDGBJP_83 | 174745 | 186736 | False | Unknown | VOG4568, |
Phigaro v2.4.0 (Database: Jan. 2024 release)