Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DMNEPPOG_11 | 64908 | 64204 | WalR | 5.86e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DMNEPPOG_29 | 9201 | 9398 | CspR | 3.93e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DMNEPPOG_44 | 509 | 1570 | repUS74 | 1062 / 1062 | 99.72 | CP000424 |
| DMNEPPOG_18 | 16641 | 17699 | repUS75 | 1059 / 1059 | 93.96 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DMNEPPOG_1 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_2 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_3 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_4 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_5 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_6 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_7 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_8 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_9 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_10 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_11 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_12 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_13 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_14 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_15 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_16 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_17 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_18 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_19 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_20 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_21 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_22 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_23 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_24 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_25 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_26 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_27 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_28 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_29 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_30 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_31 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_32 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_33 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_34 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_35 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_36 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_37 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_38 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_39 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_40 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_41 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_42 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_43 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_44 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_45 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_46 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_47 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_48 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_49 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_50 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_51 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_52 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_53 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_54 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_55 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_56 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_57 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_58 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_59 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_60 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_61 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_62 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_63 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_64 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_65 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_66 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_67 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_68 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_69 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_71 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_72 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_73 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_74 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_75 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_76 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_77 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_78 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_79 | 0.0 | 1.0 | 0.0 |
| DMNEPPOG_80 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_81 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_83 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_84 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_85 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_86 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_87 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_88 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_89 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_90 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_91 | 1.0 | 0.0 | 1.0 |
| DMNEPPOG_92 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DMNEPPOG_2 | 90711 | 123358 | False | Siphoviridae | VOG4571, VOG3304, VOG0862, VOG8520, VOG10059, VOG0181, VOG10867, VOG1302, VOG4967, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG5998, VOG6795, VOG5562, VOG0198, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637 |
| DMNEPPOG_2 | 209784 | 215916 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581 |
| DMNEPPOG_5 | 2418 | 28350 | False | Siphoviridae | VOG4892, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG0637, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)