Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGECLCAB_10 | 16904 | 17608 | WalR | 5.36e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JGECLCAB_1 | 281110 | 280916 | CspR | 1.55e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JGECLCAB_1 | 281110 | 280913 | CspA | 2.38e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JGECLCAB_49 | 7229 | 8164 | rep28 | 936 / 936 | 100.00 | CP005948 |
| JGECLCAB_50 | 2228 | 3130 | rep38 | 903 / 903 | 99.45 | CP005943 |
| JGECLCAB_76 | 196 | 694 | repUS54 | 500 / 690 | 84.80 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGECLCAB_1 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_2 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_3 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_4 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_5 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_6 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_7 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_8 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_9 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_10 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_11 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_12 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_13 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_14 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_15 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_16 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_17 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_18 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_19 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_20 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_21 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_22 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_23 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_24 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_25 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_26 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_27 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_28 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_29 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_30 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_31 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_32 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_33 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_34 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_35 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_36 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_37 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_38 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_39 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_40 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_41 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_42 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_43 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_44 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_45 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_46 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_47 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_48 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_49 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_50 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_51 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_52 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_53 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_54 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_55 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_56 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_57 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_58 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_59 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_60 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_61 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_62 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_63 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_64 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_65 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_66 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_68 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_69 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_70 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_71 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_72 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_73 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_74 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_75 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_76 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_77 | 0.0 | 1.0 | 0.0 |
| JGECLCAB_79 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_80 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_81 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_82 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_83 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_84 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_85 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_86 | 1.0 | 0.0 | 1.0 |
| JGECLCAB_87 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGECLCAB_1 | 104589 | 129704 | False | Siphoviridae | VOG4918, VOG9998, VOG8870, VOG10972, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| JGECLCAB_4 | 150523 | 171369 | False | Siphoviridae | VOG0054, VOG0753, VOG8294, VOG4334, VOG4856, VOG7548, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796 |
Phigaro v2.4.0 (Database: Jan. 2024 release)