Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFGLAKKA_10 | 80184 | 79480 | WalR | 5.36e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LFGLAKKA_1 | 70268 | 70462 | CspR | 1.14e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LFGLAKKA_1 | 70268 | 70465 | CspA | 1.76e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LFGLAKKA_49 | 7229 | 8164 | rep28 | 936 / 936 | 100.00 | CP005948 |
| LFGLAKKA_32 | 4953 | 5855 | rep38 | 903 / 903 | 99.45 | CP005943 |
| LFGLAKKA_70 | 269 | 767 | repUS54 | 500 / 690 | 84.80 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFGLAKKA_1 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_2 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_3 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_4 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_5 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_6 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_7 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_8 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_9 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_10 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_11 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_12 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_13 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_14 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_15 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_16 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_17 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_18 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_19 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_20 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_21 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_22 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_23 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_24 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_25 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_26 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_27 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_28 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_29 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_30 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_31 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_32 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_33 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_34 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_35 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_36 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_37 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_38 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_39 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_40 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_41 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_42 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_43 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_44 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_45 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_46 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_47 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_48 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_49 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_50 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_51 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_52 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_53 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_54 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_55 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_56 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_57 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_58 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_59 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_60 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_61 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_62 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_63 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_65 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_66 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_67 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_68 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_70 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_71 | 0.0 | 1.0 | 0.0 |
| LFGLAKKA_74 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_75 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_76 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_77 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_79 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_80 | 1.0 | 0.0 | 1.0 |
| LFGLAKKA_81 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFGLAKKA_1 | 221674 | 246789 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10972, VOG8870, VOG9998 |
| LFGLAKKA_4 | 1837 | 22683 | False | Siphoviridae | VOG9846, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG7548, VOG4856, VOG4334, VOG8294, VOG0753 |
Phigaro v2.4.0 (Database: Jan. 2024 release)