Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INEEIOCC_2 | 1028658 | 1030632 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| INEEIOCC_4 | 491814 | 492614 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| INEEIOCC_23 | 270232 | 270726 | nimG | ARO:3007109 | nimG | 80.12 | 100.00 | NFLR01000029.1 |
| INEEIOCC_39 | 74 | 976 | CepA-44 | ARO:3006225 | CepA-44 | 99.00 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| INEEIOCC_2 | 1028658 | 1030583 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| INEEIOCC_4 | 491814 | 492614 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| INEEIOCC_39 | 74 | 976 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | U05887 |
| INEEIOCC_23 | 270246 | 270726 | nimC | Metronidazole | 84.50 | 97.36 | X76948 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INEEIOCC_2 | 1028661 | 1030583 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| INEEIOCC_4 | 491817 | 492614 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| INEEIOCC_39 | 74 | 973 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005816369.1 |
| INEEIOCC_23 | 270244 | 270726 | nimC | 5-nitroimidazole reductase NimC | BLASTX | 81.37 | 98.77 | WP_063854491.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| INEEIOCC_41 | 67 | 746 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INEEIOCC_1 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_2 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_3 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_4 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_5 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_6 | 1.0 | 0.0 | 1.0 |
| INEEIOCC_7 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_8 | 1.0 | 0.0 | 1.0 |
| INEEIOCC_9 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_10 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_14 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_15 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_16 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_17 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_18 | 1.0 | 0.0 | 1.0 |
| INEEIOCC_19 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_20 | 1.0 | 0.0 | 1.0 |
| INEEIOCC_22 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_23 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_24 | 1.0 | 0.0 | 1.0 |
| INEEIOCC_28 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_31 | 1.0 | 0.0 | 1.0 |
| INEEIOCC_32 | 1.0 | 0.0 | 1.0 |
| INEEIOCC_34 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_39 | 0.0 | 1.0 | 0.0 |
| INEEIOCC_41 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)