Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCOIFFNI_23 | 388388 | 390361 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCOIFFNI_23 | 388436 | 390361 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HCOIFFNI_56 | 40696 | 41489 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 83.67 | 98.88 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCOIFFNI_23 | 388436 | 390358 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HCOIFFNI_56 | 40696 | 41493 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 80.83 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCOIFFNI_1 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_2 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_3 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_4 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_5 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_6 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_7 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_8 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_9 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_10 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_11 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_12 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_13 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_14 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_15 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_16 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_17 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_18 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_19 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_20 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_21 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_22 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_23 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_24 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_25 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_26 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_27 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_28 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_30 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_31 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_32 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_33 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_35 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_36 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_37 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_38 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_39 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_40 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_41 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_42 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_43 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_44 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_46 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_47 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_48 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_49 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_50 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_51 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_52 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_53 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_54 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_55 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_56 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_57 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_58 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_59 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_60 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_61 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_62 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_63 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_64 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_65 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_66 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_67 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_68 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_69 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_70 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_71 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_72 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_73 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_74 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_75 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_76 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_77 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_78 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_79 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_80 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_81 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_82 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_83 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_84 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_85 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_86 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_87 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_88 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_89 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_90 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_91 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_92 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_93 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_95 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_96 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_97 | 0.0 | 1.0 | 0.0 |
| HCOIFFNI_98 | 1.0 | 0.0 | 1.0 |
| HCOIFFNI_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCOIFFNI_6 | 40584 | 69135 | False | Myoviridae | / |
| HCOIFFNI_97 | 108756 | 124326 | False | Myoviridae | VOG4575, |
| HCOIFFNI_99 | 59008 | 65965 | False | Unknown | VOG4568, |
Phigaro v2.4.0 (Database: Jan. 2024 release)