Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NEEOAEPK_8 | 3296 | 3449 | Col156 | 154 / 154 | 95.45 | NC009781 |
| NEEOAEPK_19 | 184 | 436 | Col(MG828) | 253 / 262 | 92.89 | NC008486 |
| NEEOAEPK_14 | 3279 | 3398 | ColRNAI | 121 / 130 | 90.08 | DQ298019 |
| NEEOAEPK_20 | 1 | 193 | Col8282 | 193 / 207 | 89.64 | DQ995352 |
| NEEOAEPK_13 | 51 | 631 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEEOAEPK_1 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_2 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_3 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_4 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_5 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_6 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_7 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_8 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_9 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_10 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_11 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_12 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_13 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_14 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_15 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_16 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_17 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_18 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_19 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_20 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_21 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_22 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_23 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_24 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_25 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_26 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_27 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_28 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_29 | 1.0 | 0.0 | 1.0 |
| NEEOAEPK_30 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_31 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_32 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_33 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_34 | 0.0 | 1.0 | 0.0 |
| NEEOAEPK_35 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)