Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 3 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| AAEDFKLF_32 | 2738 | 3224 | ygeG | 0.0 | ETT2 | Effector delivery system | 96.72 | 98.98 | NP_311735 |
| AAEDFKLF_32 | 1027 | 2403 | ygeH | 0.0 | ETT2 | Effector delivery system | 94.77 | 100.00 | NP_311736 |
| AAEDFKLF_32 | 54 | 455 | pbl | 2.67e-168 | ETT2 | Effector delivery system | 93.28 | 100.00 | - |
| AAEDFKLF_64 | 1 | 787 | neuE | 0.0 | K1 capsule | Invasion | 99.62 | 68.49 | WP_000197083 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AAEDFKLF_58 | 1844 | 669 | Hcp1 | 0.0 | type VI secretion system protein | 97.45 | 100.00 | ARR33228 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AAEDFKLF_10 | 7541 | 7694 | Col156 | 154 / 154 | 96.75 | NC009781 |
| AAEDFKLF_69 | 928 | 1180 | Col(MG828) | 253 / 262 | 92.89 | NC008486 |
| AAEDFKLF_30 | 1 | 134 | Col8282 | 134 / 207 | 91.79 | DQ995352 |
| AAEDFKLF_12 | 7640 | 7759 | ColRNAI | 121 / 130 | 89.26 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AAEDFKLF_1 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_2 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_3 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_4 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_5 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_6 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_7 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_8 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_9 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_10 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_11 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_12 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_13 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_14 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_15 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_16 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_17 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_18 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_19 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_20 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_21 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_22 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_23 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_24 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_25 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_26 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_28 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_29 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_30 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_31 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_32 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_33 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_34 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_35 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_36 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_37 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_38 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_39 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_40 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_41 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_42 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_43 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_44 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_45 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_46 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_47 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_48 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_49 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_50 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_51 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_52 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_53 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_54 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_55 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_56 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_57 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_58 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_59 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_60 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_61 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_62 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_63 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_64 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_65 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_66 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_67 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_68 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_69 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_70 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_71 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_72 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_73 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_74 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_75 | 0.0 | 1.0 | 0.0 |
| AAEDFKLF_76 | 1.0 | 0.0 | 1.0 |
| AAEDFKLF_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)