Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 0 | 1 | 9.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLPDODJI_8 | 120980 | 122185 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CLPDODJI_27 | 6990 | 8915 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
| CLPDODJI_31 | 1083 | 3008 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| CLPDODJI_31 | 2 | 796 | ErmF | ARO:3000498 | ErmF | 97.73 | 99.25 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CLPDODJI_21 | 52242 | 53108 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| CLPDODJI_27 | 6990 | 8915 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
| CLPDODJI_31 | 1 | 796 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.25 | 99.38 | M17808 |
| CLPDODJI_45 | 1350 | 2567 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLPDODJI_21 | 53262 | 54035 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| CLPDODJI_21 | 52245 | 53108 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| CLPDODJI_8 | 122210 | 122719 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CLPDODJI_8 | 120980 | 122182 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CLPDODJI_27 | 6990 | 8912 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.38 | 100.00 | WP_063856407.1 |
| CLPDODJI_21 | 258 | 1097 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| CLPDODJI_45 | 1347 | 2567 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| CLPDODJI_31 | 2 | 793 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.11 | 99.25 | WP_002682030.1 |
| CLPDODJI_31 | 1083 | 3005 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CLPDODJI_13 | 51093 | 52673 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLPDODJI_1 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_2 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_3 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_4 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_5 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_6 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_7 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_8 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_9 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_10 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_11 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_12 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_13 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_14 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_15 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_16 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_17 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_18 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_19 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_20 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_21 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_22 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_23 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_24 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_25 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_26 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_27 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_28 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_29 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_30 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_31 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_32 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_33 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_34 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_35 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_36 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_37 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_38 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_39 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_40 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_41 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_42 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_43 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_44 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_45 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_46 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_47 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_48 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_49 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_50 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_51 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_52 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_53 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_54 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_55 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_56 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_57 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_58 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_59 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_60 | 1.0 | 0.0 | 1.0 |
| CLPDODJI_61 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_62 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_63 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_64 | 0.0 | 1.0 | 0.0 |
| CLPDODJI_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)