Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 1 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKMLJJGF_8 | 120980 | 122185 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| PKMLJJGF_45 | 6866 | 8791 | tet(Q) | ARO:3000191 | tet(Q) | 97.50 | 97.56 | Z21523.1 |
| PKMLJJGF_35 | 332 | 2257 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKMLJJGF_21 | 52242 | 53108 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| PKMLJJGF_45 | 6866 | 8791 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.81 | 100.00 | L33696 |
| PKMLJJGF_52 | 1350 | 2567 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKMLJJGF_21 | 53262 | 54035 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| PKMLJJGF_21 | 52245 | 53108 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| PKMLJJGF_8 | 122210 | 122719 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PKMLJJGF_8 | 120980 | 122182 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PKMLJJGF_45 | 6866 | 8788 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856407.1 |
| PKMLJJGF_21 | 258 | 1097 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| PKMLJJGF_52 | 1347 | 2567 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| PKMLJJGF_35 | 332 | 2254 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKMLJJGF_13 | 51093 | 52673 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKMLJJGF_1 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_2 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_3 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_4 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_5 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_6 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_7 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_8 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_9 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_10 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_11 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_12 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_13 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_14 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_15 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_16 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_17 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_18 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_19 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_20 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_21 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_22 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_23 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_24 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_25 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_26 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_27 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_28 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_29 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_30 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_31 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_32 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_33 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_34 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_35 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_36 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_37 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_38 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_39 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_40 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_41 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_42 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_43 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_44 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_45 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_46 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_47 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_48 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_49 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_50 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_51 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_52 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_53 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_54 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_55 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_56 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_57 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_58 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_59 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_60 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_61 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_62 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_63 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_64 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_65 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_66 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_67 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_68 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_69 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_70 | 1.0 | 0.0 | 1.0 |
| PKMLJJGF_71 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_72 | 0.0 | 1.0 | 0.0 |
| PKMLJJGF_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)