Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COBNPNGH_81 | 118418 | 119623 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| COBNPNGH_120 | 332 | 2257 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COBNPNGH_98 | 52242 | 53108 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| COBNPNGH_159 | 1350 | 2567 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
| COBNPNGH_120 | 332 | 2257 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COBNPNGH_98 | 53262 | 54035 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| COBNPNGH_98 | 52245 | 53108 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| COBNPNGH_81 | 119648 | 120157 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| COBNPNGH_81 | 118418 | 119620 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| COBNPNGH_98 | 258 | 1097 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| COBNPNGH_159 | 1347 | 2567 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| COBNPNGH_120 | 332 | 2254 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COBNPNGH_88 | 51093 | 52673 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| COBNPNGH_158 | 1838 | 2517 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
| COBNPNGH_10 | 667 | 868 | Col8282 | 202 / 207 | 89.60 | DQ995352 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COBNPNGH_1 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_2 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_3 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_4 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_5 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_6 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_7 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_8 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_9 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_10 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_11 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_12 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_13 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_14 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_15 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_16 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_17 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_18 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_19 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_20 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_21 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_22 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_23 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_24 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_25 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_26 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_27 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_28 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_29 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_30 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_31 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_32 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_33 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_34 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_35 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_36 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_37 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_38 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_39 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_40 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_41 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_42 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_44 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_45 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_46 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_47 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_48 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_49 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_50 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_51 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_52 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_53 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_54 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_55 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_56 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_57 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_58 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_59 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_60 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_61 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_62 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_63 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_65 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_66 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_67 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_68 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_69 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_70 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_71 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_72 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_73 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_74 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_75 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_76 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_77 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_78 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_79 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_80 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_81 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_82 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_83 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_84 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_85 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_86 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_87 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_88 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_89 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_90 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_91 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_92 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_93 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_94 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_95 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_96 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_97 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_98 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_99 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_100 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_101 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_102 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_103 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_104 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_105 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_106 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_107 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_108 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_109 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_110 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_111 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_112 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_113 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_114 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_115 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_116 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_117 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_118 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_119 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_120 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_121 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_122 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_123 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_124 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_125 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_126 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_127 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_128 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_129 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_130 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_131 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_132 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_133 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_134 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_135 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_136 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_137 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_138 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_139 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_140 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_141 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_142 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_143 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_144 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_145 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_146 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_147 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_148 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_149 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_150 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_151 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_152 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_153 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_154 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_155 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_156 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_157 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_158 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_159 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_160 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_161 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_162 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_163 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_164 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_165 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_166 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_167 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_168 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_169 | 0.0 | 1.0 | 0.0 |
| COBNPNGH_170 | 1.0 | 0.0 | 1.0 |
| COBNPNGH_171 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)