Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGONADLN_79 | 54477 | 54965 | nimE | ARO:3007107 | nimE | 85.80 | 95.29 | CP036548.1 |
| EGONADLN_98 | 24367 | 25101 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| EGONADLN_30 | 137 | 1027 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 110.47 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EGONADLN_98 | 24367 | 25101 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| EGONADLN_98 | 22132 | 23595 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| EGONADLN_98 | 20792 | 22006 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
| EGONADLN_79 | 54479 | 54965 | nimE | Metronidazole | 82.00 | 94.54 | AM042593 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGONADLN_30 | 140 | 1027 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| EGONADLN_98 | 24367 | 25098 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| EGONADLN_98 | 22132 | 23592 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| EGONADLN_98 | 20792 | 22015 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| EGONADLN_79 | 54480 | 54965 | nimE | 5-nitroimidazole reductase NimE | BLASTX | 85.80 | 95.29 | WP_005812773.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EGONADLN_225 | 33449 | 31869 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EGONADLN_60 | 57 | 736 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGONADLN_1 | 0.0 | 1.0 | 0.0 |
| EGONADLN_2 | 0.0 | 1.0 | 0.0 |
| EGONADLN_3 | 1.0 | 0.0 | 1.0 |
| EGONADLN_4 | 1.0 | 0.0 | 1.0 |
| EGONADLN_5 | 1.0 | 0.0 | 1.0 |
| EGONADLN_6 | 0.0 | 1.0 | 0.0 |
| EGONADLN_7 | 0.0 | 1.0 | 0.0 |
| EGONADLN_8 | 0.0 | 1.0 | 0.0 |
| EGONADLN_9 | 1.0 | 0.0 | 1.0 |
| EGONADLN_10 | 1.0 | 0.0 | 1.0 |
| EGONADLN_11 | 1.0 | 0.0 | 1.0 |
| EGONADLN_12 | 0.0 | 1.0 | 0.0 |
| EGONADLN_13 | 0.0 | 1.0 | 0.0 |
| EGONADLN_14 | 1.0 | 0.0 | 1.0 |
| EGONADLN_16 | 1.0 | 0.0 | 1.0 |
| EGONADLN_17 | 0.0 | 1.0 | 0.0 |
| EGONADLN_18 | 1.0 | 0.0 | 1.0 |
| EGONADLN_19 | 1.0 | 0.0 | 1.0 |
| EGONADLN_20 | 0.0 | 1.0 | 0.0 |
| EGONADLN_21 | 1.0 | 0.0 | 1.0 |
| EGONADLN_22 | 1.0 | 0.0 | 1.0 |
| EGONADLN_23 | 1.0 | 0.0 | 1.0 |
| EGONADLN_24 | 1.0 | 0.0 | 1.0 |
| EGONADLN_25 | 0.0 | 1.0 | 0.0 |
| EGONADLN_26 | 1.0 | 0.0 | 1.0 |
| EGONADLN_27 | 0.0 | 1.0 | 0.0 |
| EGONADLN_28 | 1.0 | 0.0 | 1.0 |
| EGONADLN_29 | 1.0 | 0.0 | 1.0 |
| EGONADLN_30 | 1.0 | 0.0 | 1.0 |
| EGONADLN_31 | 1.0 | 0.0 | 1.0 |
| EGONADLN_32 | 1.0 | 0.0 | 1.0 |
| EGONADLN_33 | 1.0 | 0.0 | 1.0 |
| EGONADLN_34 | 0.0 | 1.0 | 0.0 |
| EGONADLN_35 | 1.0 | 0.0 | 1.0 |
| EGONADLN_36 | 1.0 | 0.0 | 1.0 |
| EGONADLN_37 | 0.0 | 1.0 | 0.0 |
| EGONADLN_38 | 0.0 | 1.0 | 0.0 |
| EGONADLN_39 | 0.0 | 1.0 | 0.0 |
| EGONADLN_40 | 0.0 | 1.0 | 0.0 |
| EGONADLN_41 | 0.0 | 1.0 | 0.0 |
| EGONADLN_42 | 1.0 | 0.0 | 1.0 |
| EGONADLN_43 | 0.0 | 1.0 | 0.0 |
| EGONADLN_44 | 1.0 | 0.0 | 1.0 |
| EGONADLN_45 | 1.0 | 0.0 | 1.0 |
| EGONADLN_47 | 1.0 | 0.0 | 1.0 |
| EGONADLN_48 | 1.0 | 0.0 | 1.0 |
| EGONADLN_49 | 1.0 | 0.0 | 1.0 |
| EGONADLN_50 | 0.0 | 1.0 | 0.0 |
| EGONADLN_52 | 1.0 | 0.0 | 1.0 |
| EGONADLN_53 | 1.0 | 0.0 | 1.0 |
| EGONADLN_56 | 0.0 | 1.0 | 0.0 |
| EGONADLN_57 | 0.0 | 1.0 | 0.0 |
| EGONADLN_58 | 1.0 | 0.0 | 1.0 |
| EGONADLN_59 | 1.0 | 0.0 | 1.0 |
| EGONADLN_60 | 1.0 | 0.0 | 1.0 |
| EGONADLN_62 | 1.0 | 0.0 | 1.0 |
| EGONADLN_63 | 0.0 | 1.0 | 0.0 |
| EGONADLN_64 | 0.0 | 1.0 | 0.0 |
| EGONADLN_65 | 1.0 | 0.0 | 1.0 |
| EGONADLN_66 | 1.0 | 0.0 | 1.0 |
| EGONADLN_67 | 0.0 | 1.0 | 0.0 |
| EGONADLN_68 | 1.0 | 0.0 | 1.0 |
| EGONADLN_69 | 1.0 | 0.0 | 1.0 |
| EGONADLN_70 | 1.0 | 0.0 | 1.0 |
| EGONADLN_71 | 1.0 | 0.0 | 1.0 |
| EGONADLN_72 | 0.0 | 1.0 | 0.0 |
| EGONADLN_73 | 1.0 | 0.0 | 1.0 |
| EGONADLN_74 | 0.0 | 1.0 | 0.0 |
| EGONADLN_75 | 1.0 | 0.0 | 1.0 |
| EGONADLN_76 | 0.0 | 1.0 | 0.0 |
| EGONADLN_77 | 1.0 | 0.0 | 1.0 |
| EGONADLN_78 | 1.0 | 0.0 | 1.0 |
| EGONADLN_79 | 0.0 | 1.0 | 0.0 |
| EGONADLN_80 | 0.0 | 1.0 | 0.0 |
| EGONADLN_81 | 1.0 | 0.0 | 1.0 |
| EGONADLN_82 | 0.0 | 1.0 | 0.0 |
| EGONADLN_83 | 0.0 | 1.0 | 0.0 |
| EGONADLN_84 | 0.0 | 1.0 | 0.0 |
| EGONADLN_85 | 0.0 | 1.0 | 0.0 |
| EGONADLN_86 | 0.0 | 1.0 | 0.0 |
| EGONADLN_87 | 1.0 | 0.0 | 1.0 |
| EGONADLN_88 | 1.0 | 0.0 | 1.0 |
| EGONADLN_89 | 0.0 | 1.0 | 0.0 |
| EGONADLN_90 | 0.0 | 1.0 | 0.0 |
| EGONADLN_91 | 0.0 | 1.0 | 0.0 |
| EGONADLN_92 | 1.0 | 0.0 | 1.0 |
| EGONADLN_93 | 1.0 | 0.0 | 1.0 |
| EGONADLN_94 | 1.0 | 0.0 | 1.0 |
| EGONADLN_95 | 0.0 | 1.0 | 0.0 |
| EGONADLN_96 | 0.0 | 1.0 | 0.0 |
| EGONADLN_97 | 1.0 | 0.0 | 1.0 |
| EGONADLN_98 | 0.0 | 1.0 | 0.0 |
| EGONADLN_99 | 0.0 | 1.0 | 0.0 |
| EGONADLN_100 | 1.0 | 0.0 | 1.0 |
| EGONADLN_101 | 0.0 | 1.0 | 0.0 |
| EGONADLN_102 | 1.0 | 0.0 | 1.0 |
| EGONADLN_103 | 1.0 | 0.0 | 1.0 |
| EGONADLN_104 | 1.0 | 0.0 | 1.0 |
| EGONADLN_105 | 1.0 | 0.0 | 1.0 |
| EGONADLN_106 | 1.0 | 0.0 | 1.0 |
| EGONADLN_107 | 1.0 | 0.0 | 1.0 |
| EGONADLN_108 | 1.0 | 0.0 | 1.0 |
| EGONADLN_109 | 0.0 | 1.0 | 0.0 |
| EGONADLN_110 | 1.0 | 0.0 | 1.0 |
| EGONADLN_111 | 0.0 | 1.0 | 0.0 |
| EGONADLN_112 | 1.0 | 0.0 | 1.0 |
| EGONADLN_113 | 1.0 | 0.0 | 1.0 |
| EGONADLN_114 | 1.0 | 0.0 | 1.0 |
| EGONADLN_115 | 0.0 | 1.0 | 0.0 |
| EGONADLN_116 | 0.0 | 1.0 | 0.0 |
| EGONADLN_118 | 1.0 | 0.0 | 1.0 |
| EGONADLN_119 | 1.0 | 0.0 | 1.0 |
| EGONADLN_120 | 0.0 | 1.0 | 0.0 |
| EGONADLN_121 | 1.0 | 0.0 | 1.0 |
| EGONADLN_122 | 1.0 | 0.0 | 1.0 |
| EGONADLN_123 | 1.0 | 0.0 | 1.0 |
| EGONADLN_124 | 1.0 | 0.0 | 1.0 |
| EGONADLN_125 | 0.0 | 1.0 | 0.0 |
| EGONADLN_126 | 1.0 | 0.0 | 1.0 |
| EGONADLN_127 | 0.0 | 1.0 | 0.0 |
| EGONADLN_128 | 0.0 | 1.0 | 0.0 |
| EGONADLN_129 | 0.0 | 1.0 | 0.0 |
| EGONADLN_130 | 1.0 | 0.0 | 1.0 |
| EGONADLN_131 | 0.0 | 1.0 | 0.0 |
| EGONADLN_132 | 1.0 | 0.0 | 1.0 |
| EGONADLN_133 | 0.0 | 1.0 | 0.0 |
| EGONADLN_134 | 0.0 | 1.0 | 0.0 |
| EGONADLN_135 | 1.0 | 0.0 | 1.0 |
| EGONADLN_136 | 1.0 | 0.0 | 1.0 |
| EGONADLN_137 | 1.0 | 0.0 | 1.0 |
| EGONADLN_138 | 1.0 | 0.0 | 1.0 |
| EGONADLN_139 | 1.0 | 0.0 | 1.0 |
| EGONADLN_140 | 1.0 | 0.0 | 1.0 |
| EGONADLN_141 | 0.0 | 1.0 | 0.0 |
| EGONADLN_142 | 0.0 | 1.0 | 0.0 |
| EGONADLN_143 | 1.0 | 0.0 | 1.0 |
| EGONADLN_144 | 0.0 | 1.0 | 0.0 |
| EGONADLN_145 | 0.0 | 1.0 | 0.0 |
| EGONADLN_146 | 1.0 | 0.0 | 1.0 |
| EGONADLN_147 | 1.0 | 0.0 | 1.0 |
| EGONADLN_148 | 1.0 | 0.0 | 1.0 |
| EGONADLN_149 | 1.0 | 0.0 | 1.0 |
| EGONADLN_150 | 1.0 | 0.0 | 1.0 |
| EGONADLN_151 | 0.0 | 1.0 | 0.0 |
| EGONADLN_152 | 1.0 | 0.0 | 1.0 |
| EGONADLN_153 | 1.0 | 0.0 | 1.0 |
| EGONADLN_154 | 0.0 | 1.0 | 0.0 |
| EGONADLN_155 | 0.0 | 1.0 | 0.0 |
| EGONADLN_156 | 1.0 | 0.0 | 1.0 |
| EGONADLN_157 | 0.0 | 1.0 | 0.0 |
| EGONADLN_158 | 0.0 | 1.0 | 0.0 |
| EGONADLN_159 | 0.0 | 1.0 | 0.0 |
| EGONADLN_160 | 1.0 | 0.0 | 1.0 |
| EGONADLN_161 | 0.0 | 1.0 | 0.0 |
| EGONADLN_162 | 1.0 | 0.0 | 1.0 |
| EGONADLN_163 | 1.0 | 0.0 | 1.0 |
| EGONADLN_164 | 1.0 | 0.0 | 1.0 |
| EGONADLN_165 | 0.0 | 1.0 | 0.0 |
| EGONADLN_166 | 1.0 | 0.0 | 1.0 |
| EGONADLN_167 | 1.0 | 0.0 | 1.0 |
| EGONADLN_168 | 1.0 | 0.0 | 1.0 |
| EGONADLN_169 | 1.0 | 0.0 | 1.0 |
| EGONADLN_170 | 1.0 | 0.0 | 1.0 |
| EGONADLN_171 | 1.0 | 0.0 | 1.0 |
| EGONADLN_172 | 1.0 | 0.0 | 1.0 |
| EGONADLN_173 | 1.0 | 0.0 | 1.0 |
| EGONADLN_174 | 0.0 | 1.0 | 0.0 |
| EGONADLN_175 | 0.0 | 1.0 | 0.0 |
| EGONADLN_176 | 1.0 | 0.0 | 1.0 |
| EGONADLN_177 | 0.0 | 1.0 | 0.0 |
| EGONADLN_178 | 1.0 | 0.0 | 1.0 |
| EGONADLN_179 | 0.0 | 1.0 | 0.0 |
| EGONADLN_180 | 0.0 | 1.0 | 0.0 |
| EGONADLN_181 | 1.0 | 0.0 | 1.0 |
| EGONADLN_182 | 0.0 | 1.0 | 0.0 |
| EGONADLN_183 | 1.0 | 0.0 | 1.0 |
| EGONADLN_184 | 1.0 | 0.0 | 1.0 |
| EGONADLN_185 | 1.0 | 0.0 | 1.0 |
| EGONADLN_186 | 0.0 | 1.0 | 0.0 |
| EGONADLN_187 | 1.0 | 0.0 | 1.0 |
| EGONADLN_188 | 1.0 | 0.0 | 1.0 |
| EGONADLN_189 | 0.0 | 1.0 | 0.0 |
| EGONADLN_190 | 0.0 | 1.0 | 0.0 |
| EGONADLN_191 | 1.0 | 0.0 | 1.0 |
| EGONADLN_192 | 1.0 | 0.0 | 1.0 |
| EGONADLN_193 | 1.0 | 0.0 | 1.0 |
| EGONADLN_194 | 1.0 | 0.0 | 1.0 |
| EGONADLN_195 | 0.0 | 1.0 | 0.0 |
| EGONADLN_196 | 1.0 | 0.0 | 1.0 |
| EGONADLN_197 | 0.0 | 1.0 | 0.0 |
| EGONADLN_198 | 1.0 | 0.0 | 1.0 |
| EGONADLN_199 | 0.0 | 1.0 | 0.0 |
| EGONADLN_200 | 0.0 | 1.0 | 0.0 |
| EGONADLN_201 | 0.0 | 1.0 | 0.0 |
| EGONADLN_202 | 0.0 | 1.0 | 0.0 |
| EGONADLN_203 | 1.0 | 0.0 | 1.0 |
| EGONADLN_204 | 1.0 | 0.0 | 1.0 |
| EGONADLN_205 | 1.0 | 0.0 | 1.0 |
| EGONADLN_206 | 1.0 | 0.0 | 1.0 |
| EGONADLN_207 | 0.0 | 1.0 | 0.0 |
| EGONADLN_209 | 1.0 | 0.0 | 1.0 |
| EGONADLN_210 | 0.0 | 1.0 | 0.0 |
| EGONADLN_211 | 0.0 | 1.0 | 0.0 |
| EGONADLN_212 | 0.0 | 1.0 | 0.0 |
| EGONADLN_213 | 0.0 | 1.0 | 0.0 |
| EGONADLN_214 | 1.0 | 0.0 | 1.0 |
| EGONADLN_215 | 1.0 | 0.0 | 1.0 |
| EGONADLN_216 | 1.0 | 0.0 | 1.0 |
| EGONADLN_217 | 1.0 | 0.0 | 1.0 |
| EGONADLN_218 | 0.0 | 1.0 | 0.0 |
| EGONADLN_220 | 0.0 | 1.0 | 0.0 |
| EGONADLN_221 | 1.0 | 0.0 | 1.0 |
| EGONADLN_222 | 1.0 | 0.0 | 1.0 |
| EGONADLN_224 | 0.0 | 1.0 | 0.0 |
| EGONADLN_225 | 0.0 | 1.0 | 0.0 |
| EGONADLN_226 | 0.0 | 1.0 | 0.0 |
| EGONADLN_227 | 0.0 | 1.0 | 0.0 |
| EGONADLN_228 | 0.0 | 1.0 | 0.0 |
| EGONADLN_229 | 0.0 | 1.0 | 0.0 |
| EGONADLN_230 | 0.0 | 1.0 | 0.0 |
| EGONADLN_231 | 0.0 | 1.0 | 0.0 |
| EGONADLN_232 | 1.0 | 0.0 | 1.0 |
| EGONADLN_233 | 1.0 | 0.0 | 1.0 |
| EGONADLN_234 | 1.0 | 0.0 | 1.0 |
| EGONADLN_235 | 1.0 | 0.0 | 1.0 |
| EGONADLN_236 | 1.0 | 0.0 | 1.0 |
| EGONADLN_237 | 1.0 | 0.0 | 1.0 |
| EGONADLN_238 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGONADLN_86 | 5968 | 15719 | True | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)