Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMPJIJBA_49 | 12504 | 13241 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| GMPJIJBA_100 | 3047 | 4252 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| GMPJIJBA_117 | 3 | 1961 | tet(Q) | ARO:3000191 | tet(Q) | 96.94 | 99.39 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GMPJIJBA_49 | 12504 | 13241 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| GMPJIJBA_117 | 1 | 1913 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.63 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMPJIJBA_49 | 7932 | 8705 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| GMPJIJBA_100 | 2513 | 3022 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| GMPJIJBA_100 | 3050 | 4252 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| GMPJIJBA_117 | 3 | 1913 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.22 | 99.38 | WP_063856407.1 |
| GMPJIJBA_49 | 12504 | 13238 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GMPJIJBA_40 | 22652 | 21072 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GMPJIJBA_113 | 121 | 800 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMPJIJBA_1 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_2 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_3 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_4 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_5 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_6 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_7 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_8 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_9 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_10 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_11 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_12 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_13 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_14 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_15 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_16 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_17 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_18 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_19 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_20 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_21 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_22 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_23 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_24 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_25 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_26 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_27 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_28 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_29 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_31 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_33 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_34 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_36 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_37 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_38 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_39 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_40 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_41 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_42 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_43 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_44 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_45 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_46 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_47 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_48 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_49 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_50 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_51 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_52 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_53 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_55 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_56 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_57 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_58 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_59 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_60 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_61 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_62 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_63 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_64 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_65 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_66 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_67 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_68 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_69 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_70 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_71 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_72 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_73 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_74 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_75 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_76 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_77 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_78 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_79 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_80 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_81 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_82 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_83 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_84 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_85 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_86 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_87 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_88 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_89 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_90 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_91 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_93 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_94 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_95 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_96 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_97 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_98 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_99 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_100 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_101 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_102 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_103 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_104 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_105 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_106 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_107 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_108 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_109 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_110 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_111 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_112 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_113 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_114 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_115 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_116 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_117 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_118 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_119 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_120 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_121 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_122 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_123 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_124 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_125 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_126 | 1.0 | 0.0 | 1.0 |
| GMPJIJBA_129 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_130 | 0.0 | 1.0 | 0.0 |
| GMPJIJBA_131 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)