Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHNDAABJ_34 | 12504 | 13241 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| BHNDAABJ_55 | 354 | 1559 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| BHNDAABJ_75 | 3 | 1961 | tet(Q) | ARO:3000191 | tet(Q) | 96.63 | 99.39 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BHNDAABJ_34 | 12504 | 13241 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| BHNDAABJ_75 | 1 | 1913 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.42 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHNDAABJ_34 | 7932 | 8705 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| BHNDAABJ_55 | 1584 | 2093 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| BHNDAABJ_55 | 354 | 1556 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| BHNDAABJ_75 | 3 | 1913 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.22 | 99.38 | WP_063856407.1 |
| BHNDAABJ_34 | 12504 | 13238 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BHNDAABJ_29 | 22652 | 21072 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BHNDAABJ_72 | 1996 | 2576 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BHNDAABJ_1 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_2 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_3 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_4 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_5 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_6 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_7 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_8 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_9 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_10 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_11 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_12 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_13 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_14 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_15 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_16 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_17 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_18 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_19 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_20 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_21 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_22 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_23 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_24 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_25 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_26 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_27 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_28 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_29 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_30 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_31 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_32 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_33 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_34 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_35 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_36 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_37 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_38 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_39 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_40 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_41 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_42 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_43 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_44 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_45 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_46 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_47 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_48 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_49 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_50 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_51 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_52 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_53 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_54 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_55 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_56 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_57 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_58 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_59 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_60 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_62 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_63 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_64 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_65 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_67 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_68 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_69 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_70 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_71 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_72 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_73 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_74 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_75 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_76 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_77 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_78 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_79 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_80 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_81 | 0.0 | 1.0 | 0.0 |
| BHNDAABJ_82 | 1.0 | 0.0 | 1.0 |
| BHNDAABJ_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)