Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGNLHMDI_1 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_2 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_3 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_5 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_6 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_8 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_9 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_10 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_11 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_12 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_13 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_14 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_15 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_16 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_17 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_18 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_19 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_20 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_21 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_22 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_23 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_24 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_25 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_26 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_27 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_28 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_29 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_30 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_31 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_32 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_33 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_34 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_35 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_36 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_37 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_38 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_39 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_40 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_41 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_42 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_43 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_44 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_45 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_46 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_47 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_48 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_49 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_50 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_51 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_52 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_53 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_54 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_55 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_56 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_57 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_58 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_59 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_60 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_61 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_63 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_64 | 1.0 | 0.0 | 1.0 |
| CGNLHMDI_65 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_66 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_67 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_68 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_69 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_71 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_72 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_73 | 0.0 | 1.0 | 0.0 |
| CGNLHMDI_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGNLHMDI_20 | 4590 | 16016 | True | Siphoviridae | VOG4659, |
| CGNLHMDI_25 | 10096 | 37801 | False | Siphoviridae | VOG10483, |
| CGNLHMDI_36 | 43854 | 54872 | False | Myoviridae | VOG6495, |
| CGNLHMDI_48 | 9137 | 13157 | False | Unknown | VOG8625, |
| CGNLHMDI_72 | 5983 | 14341 | False | Siphoviridae | VOG3435, |
Phigaro v2.4.0 (Database: Jan. 2024 release)