Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NODIPJOO_1 | 9706 | 10443 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| NODIPJOO_115 | 2796 | 4016 | tet(40) | ARO:3000567 | tet(40) | 98.52 | 100.00 | AM419751.1 |
| NODIPJOO_115 | 826 | 2745 | tet(O) | ARO:3000190 | tet(O) | 99.22 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NODIPJOO_115 | 2796 | 4016 | tet(40) | Doxycycline, Tetracycline | 99.92 | 100.00 | FJ158002 |
| NODIPJOO_115 | 826 | 2745 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | M18896 |
| NODIPJOO_1 | 9706 | 10443 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | JN899585 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NODIPJOO_115 | 2796 | 4013 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_009247026.1 |
| NODIPJOO_115 | 826 | 2742 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.69 | 100.00 | WP_012669445.1 |
| NODIPJOO_1 | 9709 | 10443 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_001038795.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NODIPJOO_1 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_2 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_3 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_4 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_5 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_6 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_7 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_8 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_9 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_10 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_11 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_12 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_13 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_14 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_15 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_16 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_17 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_18 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_19 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_20 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_21 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_22 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_23 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_24 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_25 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_26 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_27 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_28 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_29 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_30 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_31 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_32 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_33 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_34 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_35 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_36 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_37 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_38 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_39 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_40 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_41 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_42 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_43 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_44 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_45 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_46 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_47 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_48 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_49 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_50 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_51 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_52 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_53 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_54 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_55 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_56 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_57 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_58 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_59 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_60 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_61 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_62 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_63 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_64 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_65 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_66 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_67 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_68 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_69 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_70 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_71 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_72 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_73 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_74 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_75 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_76 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_77 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_78 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_79 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_80 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_81 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_82 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_83 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_84 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_85 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_86 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_87 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_88 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_89 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_90 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_91 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_92 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_93 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_94 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_95 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_96 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_97 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_98 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_99 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_100 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_101 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_102 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_103 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_104 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_105 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_106 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_107 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_108 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_109 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_110 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_111 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_112 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_113 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_114 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_115 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_116 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_117 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_118 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_119 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_120 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_121 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_122 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_123 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_124 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_125 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_126 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_127 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_128 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_129 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_130 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_131 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_132 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_133 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_134 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_135 | 1.0 | 0.0 | 1.0 |
| NODIPJOO_136 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_137 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_138 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_139 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_140 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_141 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_142 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_143 | 0.0 | 1.0 | 0.0 |
| NODIPJOO_144 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NODIPJOO_129 | 38015 | 48021 | False | Podoviridae | VOG4341, |
Phigaro v2.4.0 (Database: Jan. 2024 release)