Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JACNLLJC_31 | 7333 | 9255 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
| JACNLLJC_10 | 92 | 655 | lnuC | ARO:3002837 | lnuC | 98.17 | 114.02 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JACNLLJC_10 | 92 | 586 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
| JACNLLJC_31 | 7333 | 9246 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 99.69 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JACNLLJC_31 | 7333 | 9246 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
| JACNLLJC_10 | 95 | 586 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JACNLLJC_1 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_2 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_3 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_4 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_5 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_6 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_7 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_8 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_9 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_10 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_11 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_12 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_13 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_14 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_15 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_16 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_17 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_18 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_19 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_20 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_21 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_22 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_23 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_24 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_25 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_26 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_27 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_28 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_29 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_30 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_31 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_32 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_33 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_34 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_35 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_36 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_37 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_38 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_39 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_40 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_41 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_42 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_43 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_44 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_45 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_46 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_47 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_49 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_51 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_52 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_53 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_54 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_55 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_56 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_57 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_58 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_59 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_60 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_61 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_64 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_65 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_66 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_67 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_68 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_69 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_70 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_71 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_73 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_74 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_76 | 1.0 | 0.0 | 1.0 |
| JACNLLJC_77 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_88 | 0.0 | 1.0 | 0.0 |
| JACNLLJC_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)