Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDONFJLO_1 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_2 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_3 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_4 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_5 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_6 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_7 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_8 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_9 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_10 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_11 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_12 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_13 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_14 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_15 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_16 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_17 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_18 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_19 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_23 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_29 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_30 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_31 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_32 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_33 | 0.0 | 1.0 | 0.0 |
| HDONFJLO_34 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDONFJLO_23 | 61243 | 85341 | False | Siphoviridae | VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG1448, VOG1259, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052 |
| HDONFJLO_29 | 120791 | 127575 | False | Siphoviridae | VOG0862, VOG6495, VOG4603, VOG2228, VOG0685, VOG0283, VOG4566, VOG11077, VOG4552 |
| HDONFJLO_29 | 133927 | 156506 | False | Myoviridae | VOG0796, VOG10904, VOG0720, VOG4564, VOG4555, VOG4572, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG3636, VOG4865, VOG4885, VOG3894, VOG4691, VOG4862, VOG5763, VOG9945, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)