Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
ALIJPCPC_12127520128224WalR2.02e-114transcriptional regulatory protein84.25100.00EPH95667
ALIJPCPC_349849598689CspR8.26e-30cold shock protein84.6198.48AAO82613
ALIJPCPC_349849598692CspA1.27e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
ALIJPCPC_227531688rep28936 / 936100.00CP005948
ALIJPCPC_2719332823rep38903 / 90397.67CP005943
ALIJPCPC_351957repUS64958 / 95491.96JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
ALIJPCPC_10.01.00.0
ALIJPCPC_20.01.00.0
ALIJPCPC_30.01.00.0
ALIJPCPC_40.01.00.0
ALIJPCPC_50.01.00.0
ALIJPCPC_60.01.00.0
ALIJPCPC_70.01.00.0
ALIJPCPC_80.01.00.0
ALIJPCPC_90.01.00.0
ALIJPCPC_100.01.00.0
ALIJPCPC_110.01.00.0
ALIJPCPC_120.01.00.0
ALIJPCPC_130.01.00.0
ALIJPCPC_140.01.00.0
ALIJPCPC_151.00.01.0
ALIJPCPC_161.00.01.0
ALIJPCPC_171.00.01.0
ALIJPCPC_180.01.00.0
ALIJPCPC_191.00.01.0
ALIJPCPC_201.00.01.0
ALIJPCPC_211.00.01.0
ALIJPCPC_221.00.01.0
ALIJPCPC_230.01.00.0
ALIJPCPC_241.00.01.0
ALIJPCPC_250.01.00.0
ALIJPCPC_261.00.01.0
ALIJPCPC_271.00.01.0
ALIJPCPC_281.00.01.0
ALIJPCPC_291.00.01.0
ALIJPCPC_301.00.01.0
ALIJPCPC_311.00.01.0
ALIJPCPC_331.00.01.0
ALIJPCPC_340.01.00.0
ALIJPCPC_351.00.01.0
ALIJPCPC_361.00.01.0
ALIJPCPC_381.00.01.0
ALIJPCPC_391.00.01.0
ALIJPCPC_401.00.01.0
ALIJPCPC_450.01.00.0
ALIJPCPC_560.01.00.0
ALIJPCPC_600.01.00.0
ALIJPCPC_610.01.00.0
ALIJPCPC_620.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
ALIJPCPC_16995197737FalseSiphoviridaeVOG5073, VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957
ALIJPCPC_383695104370FalseSiphoviridaeVOG1637, VOG8294, VOG5361, VOG7896, VOG4334, VOG8438, VOG3463, VOG3462, VOG0801, VOG3949, VOG3636, VOG1323, VOG0725, VOG0799, VOG9583, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564
ALIJPCPC_60115043130881FalseSiphoviridaeVOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements